Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC14.61□□□□□ -0.07
FOXA3P55318 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
FOXA3P55318 AP000997.3-201ENST00000623333 2250 ntBASIC14.61□□□□□ -0.07
FOXA3P55318 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA3P55318 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA3P55318 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
FOXA3P55318 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA3P55318 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.6□□□□□ -0.07
FOXA3P55318 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
FOXA3P55318 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA3P55318 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC14.6□□□□□ -0.07
FOXA3P55318 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC14.6□□□□□ -0.07
FOXA3P55318 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
FOXA3P55318 AL035685.1-201ENST00000636663 812 ntBASIC14.6□□□□□ -0.07
FOXA3P55318 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
FOXA3P55318 AC012313.1-201ENST00000593393 3059 ntBASIC14.6□□□□□ -0.07
FOXA3P55318 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA3P55318 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC14.6□□□□□ -0.07
FOXA3P55318 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
FOXA3P55318 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC14.59□□□□□ -0.07
FOXA3P55318 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
FOXA3P55318 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC14.59□□□□□ -0.07
FOXA3P55318 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
FOXA3P55318 MIR572-201ENST00000384983 95 ntBASIC14.59□□□□□ -0.07
FOXA3P55318 AC091799.1-201ENST00000422823 811 ntBASIC14.59□□□□□ -0.07
FOXA3P55318 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC14.59□□□□□ -0.07
FOXA3P55318 AC243732.1-201ENST00000612648 864 ntBASIC14.59□□□□□ -0.07
FOXA3P55318 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 TSPY26P-201ENST00000476365 1326 ntBASIC14.59□□□□□ -0.07
FOXA3P55318 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC14.59□□□□□ -0.07
FOXA3P55318 AC006333.2-201ENST00000607957 2099 ntBASIC14.59□□□□□ -0.07
FOXA3P55318 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
FOXA3P55318 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
FOXA3P55318 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA3P55318 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA3P55318 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
FOXA3P55318 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC14.58□□□□□ -0.07
FOXA3P55318 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC14.58□□□□□ -0.07
FOXA3P55318 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA3P55318 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA3P55318 KRT87P-202ENST00000534226 1464 ntBASIC14.58□□□□□ -0.08
FOXA3P55318 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
FOXA3P55318 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA3P55318 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 NAA20-201ENST00000310450 920 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA3P55318 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
FOXA3P55318 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC14.58□□□□□ -0.08
FOXA3P55318 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
FOXA3P55318 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA3P55318 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
FOXA3P55318 AC090164.3-201ENST00000610780 2143 ntBASIC14.58□□□□□ -0.08
FOXA3P55318 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC14.58□□□□□ -0.08
FOXA3P55318 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
FOXA3P55318 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 MPST-204ENST00000404393 1329 ntTSL 5 BASIC14.58□□□□□ -0.08
FOXA3P55318 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
FOXA3P55318 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA3P55318 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC14.57□□□□□ -0.08
FOXA3P55318 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
FOXA3P55318 AL161938.1-201ENST00000569833 2180 ntBASIC14.57□□□□□ -0.08
FOXA3P55318 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC14.57□□□□□ -0.08
FOXA3P55318 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
FOXA3P55318 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms