Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC22.52■■□□□ 1.19
HMGCS2P54868 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
HMGCS2P54868 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGCS2P54868 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
HMGCS2P54868 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC22.51■■□□□ 1.19
HMGCS2P54868 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.51■■□□□ 1.19
HMGCS2P54868 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
HMGCS2P54868 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC22.51■■□□□ 1.19
HMGCS2P54868 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.51■■□□□ 1.19
HMGCS2P54868 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC22.51■■□□□ 1.19
HMGCS2P54868 CA15P1-201ENST00000481698 905 ntBASIC22.51■■□□□ 1.19
HMGCS2P54868 CKBP1-201ENST00000565489 1086 ntBASIC22.51■■□□□ 1.19
HMGCS2P54868 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.51■■□□□ 1.19
HMGCS2P54868 AL023973.1-201ENST00000624619 620 ntBASIC22.51■■□□□ 1.19
HMGCS2P54868 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.51■■□□□ 1.19
HMGCS2P54868 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.51■■□□□ 1.19
HMGCS2P54868 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
HMGCS2P54868 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
HMGCS2P54868 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22.51■■□□□ 1.19
HMGCS2P54868 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.5■■□□□ 1.19
HMGCS2P54868 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 AP003041.3-201ENST00000527151 707 ntBASIC22.5■■□□□ 1.19
HMGCS2P54868 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC22.5■■□□□ 1.19
HMGCS2P54868 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC22.5■■□□□ 1.19
HMGCS2P54868 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
HMGCS2P54868 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
HMGCS2P54868 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC22.49■■□□□ 1.19
HMGCS2P54868 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC22.49■■□□□ 1.19
HMGCS2P54868 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
HMGCS2P54868 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC22.49■■□□□ 1.19
HMGCS2P54868 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
HMGCS2P54868 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
HMGCS2P54868 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC22.49■■□□□ 1.19
HMGCS2P54868 CD320-202ENST00000537716 1119 ntTSL 2 BASIC22.49■■□□□ 1.19
HMGCS2P54868 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC22.49■■□□□ 1.19
HMGCS2P54868 AL441883.1-201ENST00000566170 1045 ntBASIC22.49■■□□□ 1.19
HMGCS2P54868 AL512604.3-201ENST00000569583 964 ntBASIC22.49■■□□□ 1.19
HMGCS2P54868 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.49■■□□□ 1.19
HMGCS2P54868 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC22.49■■□□□ 1.19
HMGCS2P54868 AP000550.4-202ENST00000639755 178 ntBASIC22.49■■□□□ 1.19
HMGCS2P54868 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC22.49■■□□□ 1.19
HMGCS2P54868 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.49■■□□□ 1.19
HMGCS2P54868 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
HMGCS2P54868 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC22.48■■□□□ 1.19
HMGCS2P54868 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGCS2P54868 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGCS2P54868 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 AL359075.1-203ENST00000462729 1002 ntBASIC22.48■■□□□ 1.19
HMGCS2P54868 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC22.48■■□□□ 1.19
HMGCS2P54868 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGCS2P54868 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC22.48■■□□□ 1.19
HMGCS2P54868 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC22.48■■□□□ 1.19
HMGCS2P54868 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC22.48■■□□□ 1.19
HMGCS2P54868 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
HMGCS2P54868 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC22.48■■□□□ 1.19
HMGCS2P54868 AC073314.1-201ENST00000568729 2216 ntBASIC22.47■■□□□ 1.19
HMGCS2P54868 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HMGCS2P54868 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC22.47■■□□□ 1.19
HMGCS2P54868 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
HMGCS2P54868 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGCS2P54868 AL691432.2-201ENST00000607222 2038 ntBASIC22.47■■□□□ 1.19
HMGCS2P54868 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGCS2P54868 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGCS2P54868 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC22.47■■□□□ 1.19
HMGCS2P54868 COPS8-203ENST00000409334 794 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGCS2P54868 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC22.47■■□□□ 1.19
HMGCS2P54868 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.47■■□□□ 1.19
HMGCS2P54868 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC22.47■■□□□ 1.19
HMGCS2P54868 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC22.47■■□□□ 1.19
HMGCS2P54868 DBP-204ENST00000599385 709 ntTSL 3 BASIC22.47■■□□□ 1.19
HMGCS2P54868 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC22.47■■□□□ 1.19
HMGCS2P54868 AL031432.5-201ENST00000641059 760 ntBASIC22.47■■□□□ 1.19
HMGCS2P54868 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.47■■□□□ 1.19
HMGCS2P54868 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
HMGCS2P54868 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC22.47■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms