Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.57■□□□□ 0.56
MSX2P35548 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 TEX21P-204ENST00000641479 1693 ntBASIC18.57■□□□□ 0.56
MSX2P35548 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MSX2P35548 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MSX2P35548 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.57■□□□□ 0.56
MSX2P35548 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.57■□□□□ 0.56
MSX2P35548 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.57■□□□□ 0.56
MSX2P35548 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.57■□□□□ 0.56
MSX2P35548 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
MSX2P35548 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
MSX2P35548 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.57■□□□□ 0.56
MSX2P35548 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MSX2P35548 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.56■□□□□ 0.56
MSX2P35548 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.56■□□□□ 0.56
MSX2P35548 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC18.56■□□□□ 0.56
MSX2P35548 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.56■□□□□ 0.56
MSX2P35548 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.56■□□□□ 0.56
MSX2P35548 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.56■□□□□ 0.56
MSX2P35548 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.56■□□□□ 0.56
MSX2P35548 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.56■□□□□ 0.56
MSX2P35548 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 KRT8P20-201ENST00000423953 1409 ntBASIC18.56■□□□□ 0.56
MSX2P35548 AC004854.2-201ENST00000608450 1441 ntBASIC18.56■□□□□ 0.56
MSX2P35548 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
MSX2P35548 LINC02228-203ENST00000641970 1355 ntBASIC18.55■□□□□ 0.56
MSX2P35548 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 AC027612.3-201ENST00000413684 1047 ntBASIC18.55■□□□□ 0.56
MSX2P35548 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC18.55■□□□□ 0.56
MSX2P35548 TERF1P2-201ENST00000583350 1212 ntBASIC18.55■□□□□ 0.56
MSX2P35548 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
MSX2P35548 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
MSX2P35548 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
MSX2P35548 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 AC090164.3-201ENST00000610780 2143 ntBASIC18.55■□□□□ 0.56
MSX2P35548 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
MSX2P35548 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.55■□□□□ 0.56
MSX2P35548 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
MSX2P35548 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
MSX2P35548 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.54■□□□□ 0.56
MSX2P35548 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.54■□□□□ 0.56
MSX2P35548 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.54■□□□□ 0.56
MSX2P35548 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
MSX2P35548 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.54■□□□□ 0.56
MSX2P35548 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
MSX2P35548 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
MSX2P35548 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms