Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.99■■□□□ 1.11
CIITAP33076 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.99■■□□□ 1.11
CIITAP33076 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.99■■□□□ 1.11
CIITAP33076 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
CIITAP33076 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.99■■□□□ 1.11
CIITAP33076 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.98■■□□□ 1.11
CIITAP33076 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.98■■□□□ 1.11
CIITAP33076 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC21.98■■□□□ 1.11
CIITAP33076 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC21.98■■□□□ 1.11
CIITAP33076 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 PTPA-216ENST00000432651 857 ntTSL 2 BASIC21.98■■□□□ 1.11
CIITAP33076 Z85996.1-201ENST00000494644 937 ntBASIC21.98■■□□□ 1.11
CIITAP33076 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.98■■□□□ 1.11
CIITAP33076 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.98■■□□□ 1.11
CIITAP33076 AP003071.4-201ENST00000562276 1284 ntBASIC21.98■■□□□ 1.11
CIITAP33076 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.98■■□□□ 1.11
CIITAP33076 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC21.98■■□□□ 1.11
CIITAP33076 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.98■■□□□ 1.11
CIITAP33076 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.98■■□□□ 1.11
CIITAP33076 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
CIITAP33076 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.98■■□□□ 1.11
CIITAP33076 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC21.97■■□□□ 1.11
CIITAP33076 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.97■■□□□ 1.11
CIITAP33076 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC21.97■■□□□ 1.11
CIITAP33076 AL355355.2-201ENST00000442321 338 ntBASIC21.97■■□□□ 1.11
CIITAP33076 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.97■■□□□ 1.11
CIITAP33076 GLRB-205ENST00000512619 728 ntTSL 3 BASIC21.97■■□□□ 1.11
CIITAP33076 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC21.97■■□□□ 1.11
CIITAP33076 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 AL160286.2-201ENST00000567150 934 ntBASIC21.97■■□□□ 1.11
CIITAP33076 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
CIITAP33076 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CIITAP33076 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.96■■□□□ 1.11
CIITAP33076 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CIITAP33076 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.96■■□□□ 1.11
CIITAP33076 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
CIITAP33076 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CIITAP33076 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CIITAP33076 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
CIITAP33076 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC21.96■■□□□ 1.11
CIITAP33076 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC21.96■■□□□ 1.11
CIITAP33076 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC21.96■■□□□ 1.11
CIITAP33076 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC21.96■■□□□ 1.11
CIITAP33076 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CIITAP33076 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC21.96■■□□□ 1.11
CIITAP33076 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CIITAP33076 REXO1L10P-201ENST00000615707 1290 ntBASIC21.96■■□□□ 1.11
CIITAP33076 REXO1L12P-201ENST00000622156 912 ntBASIC21.96■■□□□ 1.11
CIITAP33076 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.96■■□□□ 1.11
CIITAP33076 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
CIITAP33076 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
CIITAP33076 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 PWWP2AP1-201ENST00000429776 2273 ntBASIC21.95■■□□□ 1.1
CIITAP33076 ZNF815P-204ENST00000434898 1737 ntBASIC21.95■■□□□ 1.1
CIITAP33076 AC104417.2-201ENST00000562989 1793 ntBASIC21.95■■□□□ 1.1
CIITAP33076 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC21.95■■□□□ 1.1
CIITAP33076 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC21.95■■□□□ 1.1
CIITAP33076 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 AC011506.1-201ENST00000474329 610 ntBASIC21.95■■□□□ 1.1
CIITAP33076 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
CIITAP33076 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.95■■□□□ 1.1
CIITAP33076 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.95■■□□□ 1.1
CIITAP33076 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.95■■□□□ 1.1
CIITAP33076 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.95■■□□□ 1.1
CIITAP33076 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC21.95■■□□□ 1.1
CIITAP33076 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
CIITAP33076 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CIITAP33076 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.95■■□□□ 1.1
CIITAP33076 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.95■■□□□ 1.1
CIITAP33076 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
CIITAP33076 LINC01465-201ENST00000408887 1940 ntBASIC21.94■■□□□ 1.1
CIITAP33076 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.94■■□□□ 1.1
CIITAP33076 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms