Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
RB1P06400 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.65■□□□□ 0.9
RB1P06400 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
RB1P06400 ZNF444P1-201ENST00000559497 298 ntBASIC20.65■□□□□ 0.9
RB1P06400 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC20.65■□□□□ 0.9
RB1P06400 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC20.65■□□□□ 0.9
RB1P06400 LINC00565-201ENST00000562710 2331 ntBASIC20.65■□□□□ 0.9
RB1P06400 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.65■□□□□ 0.9
RB1P06400 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.65■□□□□ 0.9
RB1P06400 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
RB1P06400 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
RB1P06400 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RB1P06400 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.64■□□□□ 0.89
RB1P06400 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.64■□□□□ 0.89
RB1P06400 STARP1-201ENST00000397973 869 ntBASIC20.64■□□□□ 0.89
RB1P06400 AC112907.2-201ENST00000448639 330 ntBASIC20.64■□□□□ 0.89
RB1P06400 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC20.64■□□□□ 0.89
RB1P06400 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.64■□□□□ 0.89
RB1P06400 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
RB1P06400 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RB1P06400 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.64■□□□□ 0.89
RB1P06400 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
RB1P06400 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RB1P06400 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RB1P06400 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RB1P06400 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
RB1P06400 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RB1P06400 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
RB1P06400 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC20.63■□□□□ 0.89
RB1P06400 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.63■□□□□ 0.89
RB1P06400 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
RB1P06400 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC20.63■□□□□ 0.89
RB1P06400 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.63■□□□□ 0.89
RB1P06400 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RB1P06400 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.62■□□□□ 0.89
RB1P06400 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.62■□□□□ 0.89
RB1P06400 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
RB1P06400 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RB1P06400 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.62■□□□□ 0.89
RB1P06400 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC20.62■□□□□ 0.89
RB1P06400 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.62■□□□□ 0.89
RB1P06400 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.62■□□□□ 0.89
RB1P06400 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 AP001271.2-201ENST00000624018 1556 ntBASIC20.62■□□□□ 0.89
RB1P06400 KRT8P41-201ENST00000533985 1514 ntBASIC20.62■□□□□ 0.89
RB1P06400 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RB1P06400 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RB1P06400 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
RB1P06400 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.61■□□□□ 0.89
RB1P06400 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC20.61■□□□□ 0.89
RB1P06400 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.61■□□□□ 0.89
RB1P06400 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 Telomerase-vert.1-201ENST00000363312 438 ntBASIC20.61■□□□□ 0.89
RB1P06400 ATP5G2P1-201ENST00000433580 426 ntBASIC20.61■□□□□ 0.89
RB1P06400 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.61■□□□□ 0.89
RB1P06400 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.61■□□□□ 0.89
RB1P06400 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC20.61■□□□□ 0.89
RB1P06400 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.61■□□□□ 0.89
RB1P06400 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC20.61■□□□□ 0.89
RB1P06400 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.61■□□□□ 0.89
RB1P06400 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC20.61■□□□□ 0.89
RB1P06400 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC20.61■□□□□ 0.89
RB1P06400 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC20.61■□□□□ 0.89
RB1P06400 AC083849.1-201ENST00000615227 514 ntBASIC20.61■□□□□ 0.89
RB1P06400 HYMAI.1-201ENST00000620949 238 ntBASIC20.61■□□□□ 0.89
RB1P06400 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC20.61■□□□□ 0.89
RB1P06400 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.61■□□□□ 0.89
RB1P06400 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RB1P06400 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
RB1P06400 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
RB1P06400 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.6■□□□□ 0.89
RB1P06400 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
RB1P06400 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RB1P06400 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms