Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CLDN9O95484 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLDN9O95484 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.82■□□□□ 0.6
CLDN9O95484 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC18.82■□□□□ 0.6
CLDN9O95484 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC18.82■□□□□ 0.6
CLDN9O95484 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLDN9O95484 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.82■□□□□ 0.6
CLDN9O95484 AL121829.2-201ENST00000620908 328 ntBASIC18.82■□□□□ 0.6
CLDN9O95484 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.82■□□□□ 0.6
CLDN9O95484 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.82■□□□□ 0.6
CLDN9O95484 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLDN9O95484 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLDN9O95484 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN9O95484 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN9O95484 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN9O95484 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CLDN9O95484 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CLDN9O95484 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 ZNF815P-204ENST00000434898 1737 ntBASIC18.81■□□□□ 0.6
CLDN9O95484 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.81■□□□□ 0.6
CLDN9O95484 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.81■□□□□ 0.6
CLDN9O95484 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
CLDN9O95484 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.81■□□□□ 0.6
CLDN9O95484 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.81■□□□□ 0.6
CLDN9O95484 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLDN9O95484 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN9O95484 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN9O95484 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN9O95484 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLDN9O95484 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CLDN9O95484 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.8■□□□□ 0.6
CLDN9O95484 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLDN9O95484 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLDN9O95484 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 AL355802.2-201ENST00000402069 882 ntBASIC18.79■□□□□ 0.6
CLDN9O95484 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CLDN9O95484 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
CLDN9O95484 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 UNC93B4-201ENST00000505679 747 ntBASIC18.79■□□□□ 0.6
CLDN9O95484 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CLDN9O95484 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CLDN9O95484 KRT8P8-201ENST00000434750 1448 ntBASIC18.79■□□□□ 0.6
CLDN9O95484 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.79■□□□□ 0.6
CLDN9O95484 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.79■□□□□ 0.6
CLDN9O95484 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 AC120498.9-201ENST00000339021 3867 ntBASIC18.79■□□□□ 0.6
CLDN9O95484 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLDN9O95484 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms