Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.14■□□□□ 0.49
PRKNO60260 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PRKNO60260 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PRKNO60260 AL135905.2-201ENST00000584934 1404 ntBASIC18.14■□□□□ 0.49
PRKNO60260 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PRKNO60260 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.14■□□□□ 0.49
PRKNO60260 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.13■□□□□ 0.49
PRKNO60260 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.13■□□□□ 0.49
PRKNO60260 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.13■□□□□ 0.49
PRKNO60260 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.13■□□□□ 0.49
PRKNO60260 TUBB8P6-201ENST00000436895 1288 ntBASIC18.13■□□□□ 0.49
PRKNO60260 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.13■□□□□ 0.49
PRKNO60260 C1QL1P1-201ENST00000568105 661 ntBASIC18.13■□□□□ 0.49
PRKNO60260 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.13■□□□□ 0.49
PRKNO60260 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.13■□□□□ 0.49
PRKNO60260 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PRKNO60260 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.12■□□□□ 0.49
PRKNO60260 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
PRKNO60260 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
PRKNO60260 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 FAM197Y1-201ENST00000421178 764 ntBASIC18.12■□□□□ 0.49
PRKNO60260 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.12■□□□□ 0.49
PRKNO60260 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.12■□□□□ 0.49
PRKNO60260 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.12■□□□□ 0.49
PRKNO60260 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
PRKNO60260 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.12■□□□□ 0.49
PRKNO60260 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
PRKNO60260 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
PRKNO60260 LINC01465-201ENST00000408887 1940 ntBASIC18.11■□□□□ 0.49
PRKNO60260 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
PRKNO60260 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
PRKNO60260 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.11■□□□□ 0.49
PRKNO60260 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.11■□□□□ 0.49
PRKNO60260 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
PRKNO60260 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC18.11■□□□□ 0.49
PRKNO60260 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.11■□□□□ 0.49
PRKNO60260 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.11■□□□□ 0.49
PRKNO60260 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.11■□□□□ 0.49
PRKNO60260 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.11■□□□□ 0.49
PRKNO60260 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PRKNO60260 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
PRKNO60260 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.1■□□□□ 0.49
PRKNO60260 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC18.1■□□□□ 0.49
PRKNO60260 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
PRKNO60260 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 AL353807.1-201ENST00000427475 662 ntBASIC18.1■□□□□ 0.49
PRKNO60260 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.1■□□□□ 0.49
PRKNO60260 AP002982.1-201ENST00000492365 877 ntBASIC18.1■□□□□ 0.49
PRKNO60260 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.1■□□□□ 0.49
PRKNO60260 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC18.1■□□□□ 0.49
PRKNO60260 CD177P1-201ENST00000606252 935 ntBASIC18.1■□□□□ 0.49
PRKNO60260 AL353708.3-201ENST00000610272 989 ntBASIC18.1■□□□□ 0.49
PRKNO60260 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PRKNO60260 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.1■□□□□ 0.49
PRKNO60260 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PRKNO60260 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.1■□□□□ 0.49
PRKNO60260 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PRKNO60260 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms