Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
CLDN3O15551 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CLDN3O15551 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
CLDN3O15551 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.29■■□□□ 1
CLDN3O15551 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.29■■□□□ 1
CLDN3O15551 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
CLDN3O15551 KSR1P1-201ENST00000446298 240 ntBASIC21.29■■□□□ 1
CLDN3O15551 SNORA78-201ENST00000459373 127 ntBASIC21.29■■□□□ 1
CLDN3O15551 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.29■■□□□ 1
CLDN3O15551 MIR4497-201ENST00000583208 89 ntBASIC21.29■■□□□ 1
CLDN3O15551 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.29■■□□□ 1
CLDN3O15551 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CLDN3O15551 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC21.28■■□□□ 1
CLDN3O15551 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
CLDN3O15551 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC21.28■■□□□ 1
CLDN3O15551 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.28■■□□□ 1
CLDN3O15551 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.28■■□□□ 1
CLDN3O15551 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.28■■□□□ 1
CLDN3O15551 CD177P1-201ENST00000606252 935 ntBASIC21.28■■□□□ 1
CLDN3O15551 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC21.28■■□□□ 1
CLDN3O15551 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC21.28■■□□□ 1
CLDN3O15551 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC21.28■■□□□ 1
CLDN3O15551 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CLDN3O15551 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.28■■□□□ 1
CLDN3O15551 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
CLDN3O15551 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLDN3O15551 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC21.27■■□□□ 1
CLDN3O15551 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.27■■□□□ 1
CLDN3O15551 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLDN3O15551 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLDN3O15551 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC21.27■■□□□ 1
CLDN3O15551 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CLDN3O15551 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.27■■□□□ 1
CLDN3O15551 FAM197Y1-201ENST00000421178 764 ntBASIC21.27■■□□□ 1
CLDN3O15551 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.27■■□□□ 1
CLDN3O15551 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLDN3O15551 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
CLDN3O15551 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.27■□□□□ 0.99
CLDN3O15551 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.26■□□□□ 0.99
CLDN3O15551 TSPY7P-201ENST00000431358 1114 ntBASIC21.26■□□□□ 0.99
CLDN3O15551 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.26■□□□□ 0.99
CLDN3O15551 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC21.26■□□□□ 0.99
CLDN3O15551 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC21.26■□□□□ 0.99
CLDN3O15551 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CLDN3O15551 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
CLDN3O15551 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
CLDN3O15551 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLDN3O15551 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
CLDN3O15551 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC21.26■□□□□ 0.99
CLDN3O15551 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC21.26■□□□□ 0.99
CLDN3O15551 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.26■□□□□ 0.99
CLDN3O15551 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
CLDN3O15551 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.25■□□□□ 0.99
CLDN3O15551 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.25■□□□□ 0.99
CLDN3O15551 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.25■□□□□ 0.99
CLDN3O15551 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC21.25■□□□□ 0.99
CLDN3O15551 GRAP-204ENST00000573099 846 ntTSL 3 BASIC21.25■□□□□ 0.99
CLDN3O15551 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.25■□□□□ 0.99
CLDN3O15551 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC21.25■□□□□ 0.99
CLDN3O15551 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC21.25■□□□□ 0.99
CLDN3O15551 AL445675.2-201ENST00000620291 557 ntBASIC21.25■□□□□ 0.99
CLDN3O15551 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.25■□□□□ 0.99
CLDN3O15551 CR392000.1-201ENST00000624770 1228 ntBASIC21.25■□□□□ 0.99
CLDN3O15551 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLDN3O15551 SRI-203ENST00000419179 1307 ntTSL 2 BASIC21.25■□□□□ 0.99
CLDN3O15551 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLDN3O15551 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC21.24■□□□□ 0.99
CLDN3O15551 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms