Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 BX005214.3-202ENST00000619809 325 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AP002505.2-201ENST00000623585 696 ntBASIC4.39□□□□□ -1.71
NKX3-1Q99801 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
NKX3-1Q99801 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.39□□□□□ -1.71
NKX3-1Q99801 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 NEAT1-202ENST00000501122 22743 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 PANDAR-201ENST00000629595 1506 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 SNORA2.3-201ENST00000383920 135 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 RNU6-532P-201ENST00000384318 107 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 RNU6-171P-201ENST00000384354 107 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 MIR223-201ENST00000385204 110 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 OR8V1P-201ENST00000395193 873 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 HMGB3P7-201ENST00000400214 611 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 HSFY1P1-201ENST00000423928 1178 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 CACYBPP1-201ENST00000438592 684 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 RPS27P5-201ENST00000444247 244 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 MRPL35P2-201ENST00000448009 511 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AL691482.1-201ENST00000453255 87 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 RPS18P6-201ENST00000476880 458 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 SETP6-201ENST00000479329 568 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 RN7SL447P-201ENST00000494711 245 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC008638.1-201ENST00000506035 866 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 MTATP6P9-201ENST00000515039 680 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 RNU5A-7P-201ENST00000515979 116 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 RNA5SP92-201ENST00000516437 110 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 SNORA31.13-201ENST00000516624 135 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AP000916.1-201ENST00000533869 835 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC126177.5-201ENST00000549599 178 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC122134.1-201ENST00000565664 1104 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC233702.9-201ENST00000581528 203 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 IMMP1LP3-201ENST00000604197 224 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AL158050.2-201ENST00000605336 568 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AL512329.2-201ENST00000607350 548 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC112503.2-201ENST00000609005 552 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 CCT5-215ENST00000625723 135 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 SOCS5P3-201ENST00000425115 1576 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 LINC01355-201ENST00000566551 5444 ntBASIC4.38□□□□□ -1.71
NKX3-1Q99801 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.38□□□□□ -1.71
NKX3-1Q99801 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
NKX3-1Q99801 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 NXF4-202ENST00000416098 1465 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 MTND5P11-201ENST00000511037 1812 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 UBBP2-201ENST00000376781 231 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 HMGB1P10-201ENST00000395823 563 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL136131.1-201ENST00000406079 803 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 RNU4-34P-201ENST00000410431 124 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 OR13Z1P-201ENST00000416141 834 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC023128.2-201ENST00000420880 1223 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC013262.1-201ENST00000426710 252 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 AC009238.2-201ENST00000431026 355 ntBASIC4.37□□□□□ -1.71
NKX3-1Q99801 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.37□□□□□ -1.71
NKX3-1Q99801 RPL35AP21-201ENST00000437667 333 ntBASIC4.37□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms