Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AC114786.1-201ENST00000512892 1415 ntBASIC5.11□□□□□ -1.59
HOXA3O43365 BABAM2-203ENST00000361704 1686 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA3O43365 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA3O43365 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXA3O43365 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXA3O43365 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 AL662795.2-201ENST00000624252 3706 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 ZMYM4-201ENST00000314607 6994 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 CHN1-201ENST00000295497 2047 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 RNU6-433P-201ENST00000363216 104 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HOXA3O43365 SNORA51.12-201ENST00000384448 134 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HOXA3O43365 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 RPL7P58-201ENST00000402913 758 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 BTF3P7-201ENST00000407097 488 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 RN7SKP144-201ENST00000411108 279 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 PCYT1A-204ENST00000419333 1325 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 LINC00993-201ENST00000420453 540 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 ISCA1P1-201ENST00000426679 387 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 AL512649.1-201ENST00000428997 581 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 EIF3EP1-201ENST00000433978 1316 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 UBE2V1P8-201ENST00000437166 265 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 ARAFP2-201ENST00000440565 559 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 EEF1E1P1-201ENST00000446998 430 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 FGF7P6-202ENST00000451282 293 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC119744.1-201ENST00000454746 1715 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 AC098847.1-201ENST00000473094 348 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 RPL12P31-201ENST00000478433 450 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 OR7E99P-201ENST00000505750 922 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC091965.3-201ENST00000506236 208 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 OR4D12P-201ENST00000509361 911 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 KHDC1P1-201ENST00000511053 508 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 LINC02272-202ENST00000511399 607 ntTSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 RNU6-506P-201ENST00000516553 94 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC073581.1-201ENST00000519036 575 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 IGHV3-57-201ENST00000520143 280 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 IGHV4-55-201ENST00000520889 368 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AP003548.1-201ENST00000523862 711 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC244502.3-201ENST00000555460 457 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC040977.1-201ENST00000573222 343 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 MIR548S-201ENST00000581352 82 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC008507.3-201ENST00000585753 472 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AP001029.2-202ENST00000588197 739 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 AC083760.1-201ENST00000589621 670 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC105094.2-203ENST00000590357 555 ntTSL 4 BASIC5.1□□□□□ -1.59
HOXA3O43365 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.1□□□□□ -1.59
HOXA3O43365 AL596327.1-201ENST00000603629 213 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC119501.1-201ENST00000603646 475 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 SEPT7P9-203ENST00000604116 343 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC011451.2-201ENST00000604303 598 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AC108673.3-201ENST00000609183 335 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC5.1□□□□□ -1.59
HOXA3O43365 U4.5-201ENST00000617137 123 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 AL356596.1-201ENST00000624230 379 ntBASIC5.1□□□□□ -1.59
HOXA3O43365 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HOXA3O43365 CDC5L-201ENST00000371477 6423 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.1□□□□□ -1.59
HOXA3O43365 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXA3O43365 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
HOXA3O43365 CASC18-202ENST00000548557 2503 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA3O43365 ST7-203ENST00000393443 2360 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA3O43365 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC5.09□□□□□ -1.59
HOXA3O43365 FASTKD2-203ENST00000403094 2344 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
HOXA3O43365 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
HOXA3O43365 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms