Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXN3O00409 RNU6-941P-201ENST00000516346 108 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXN3O00409 OR8I1P-201ENST00000529291 931 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXN3O00409 AP002812.4-201ENST00000532139 286 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXN3O00409 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXN3O00409 AC126177.5-201ENST00000549599 178 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 AC090971.2-201ENST00000558142 510 ntTSL 3 BASIC5.66□□□□□ -1.5
FOXN3O00409 NMNAT1P5-201ENST00000559657 841 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 RPL10P14-201ENST00000565265 298 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 MIR4310-201ENST00000582950 57 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 SNORA17.5-201ENST00000630429 132 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 FRG1EP-201ENST00000634469 770 ntBASIC5.66□□□□□ -1.5
FOXN3O00409 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC5.66□□□□□ -1.5
FOXN3O00409 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
FOXN3O00409 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.66□□□□□ -1.5
FOXN3O00409 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXN3O00409 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
FOXN3O00409 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 AC023421.1-201ENST00000590535 1785 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.65□□□□□ -1.5
FOXN3O00409 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 RNA5SP242-201ENST00000364171 118 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
FOXN3O00409 SNORD116-12-201ENST00000384468 92 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 RNA5SP339-201ENST00000390987 122 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 TRIM60P5Y-201ENST00000413946 574 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.65□□□□□ -1.5
FOXN3O00409 AL133325.1-201ENST00000421090 382 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 VTI1BP4-201ENST00000427516 527 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.65□□□□□ -1.5
FOXN3O00409 CLUHP1-201ENST00000435012 1190 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.65□□□□□ -1.5
FOXN3O00409 ELOCP11-201ENST00000436690 332 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 ELOCP16-201ENST00000444494 332 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 EIF2S2P2-201ENST00000447161 982 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 PRPF38AP1-201ENST00000451976 933 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 DNAJC19P8-201ENST00000452887 259 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXN3O00409 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXN3O00409 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.65□□□□□ -1.5
FOXN3O00409 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXN3O00409 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.65□□□□□ -1.5
FOXN3O00409 AC040958.1-201ENST00000561102 201 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC5.65□□□□□ -1.5
FOXN3O00409 AC009597.2-201ENST00000604659 592 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AC009948.4-201ENST00000604692 675 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
FOXN3O00409 AC005840.5-201ENST00000619166 599 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AC006386.1-201ENST00000619436 415 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 AL121594.5-201ENST00000631724 573 ntBASIC5.65□□□□□ -1.5
FOXN3O00409 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
FOXN3O00409 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.51
FOXN3O00409 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
FOXN3O00409 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
FOXN3O00409 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.51
FOXN3O00409 AL133268.1-201ENST00000405676 1401 ntBASIC5.65□□□□□ -1.51
FOXN3O00409 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
FOXN3O00409 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
FOXN3O00409 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 OR55B1P-203ENST00000641518 2602 ntBASIC5.64□□□□□ -1.51
FOXN3O00409 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
FOXN3O00409 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
FOXN3O00409 AC092376.2-201ENST00000622621 4116 ntBASIC5.64□□□□□ -1.51
FOXN3O00409 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.64□□□□□ -1.51
FOXN3O00409 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC5.64□□□□□ -1.51
FOXN3O00409 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
FOXN3O00409 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 RNU6-353P-201ENST00000364266 108 ntBASIC5.64□□□□□ -1.51
FOXN3O00409 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
FOXN3O00409 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
FOXN3O00409 SNORA68.2-201ENST00000391263 128 ntBASIC5.64□□□□□ -1.51
FOXN3O00409 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC5.64□□□□□ -1.51
FOXN3O00409 AC092745.2-202ENST00000411880 369 ntBASIC5.64□□□□□ -1.51
FOXN3O00409 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.64□□□□□ -1.51
FOXN3O00409 BBIP1-203ENST00000423273 492 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
FOXN3O00409 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms