Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
SOX3P41225 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.67
SOX3P41225 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
SOX3P41225 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.59□□□□□ -1.67
SOX3P41225 ATP5HP3-201ENST00000396994 486 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX3P41225 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.59□□□□□ -1.67
SOX3P41225 RPL7P11-201ENST00000437586 658 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AL772161.1-201ENST00000439130 476 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX3P41225 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.59□□□□□ -1.67
SOX3P41225 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC006326.1-201ENST00000445465 787 ntBASIC4.59□□□□□ -1.67
SOX3P41225 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 HMGB1P4-201ENST00000455362 567 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC015908.1-201ENST00000478739 476 ntBASIC4.59□□□□□ -1.67
SOX3P41225 RPL5P22-201ENST00000480199 884 ntBASIC4.59□□□□□ -1.67
SOX3P41225 RN7SL346P-201ENST00000491561 294 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC073073.1-201ENST00000493920 463 ntBASIC4.59□□□□□ -1.67
SOX3P41225 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 RNA5SP249-201ENST00000516127 99 ntBASIC4.59□□□□□ -1.67
SOX3P41225 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX3P41225 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 AC019227.1-201ENST00000526902 510 ntBASIC4.59□□□□□ -1.67
SOX3P41225 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
SOX3P41225 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX3P41225 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.59□□□□□ -1.67
SOX3P41225 PCNPP1-201ENST00000552501 511 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX3P41225 AC079148.1-201ENST00000565944 819 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.59□□□□□ -1.67
SOX3P41225 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.59□□□□□ -1.67
SOX3P41225 ZNF92P2-201ENST00000600543 1059 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC005776.1-201ENST00000603164 290 ntBASIC4.59□□□□□ -1.67
SOX3P41225 MTCO2P22-201ENST00000603246 681 ntBASIC4.59□□□□□ -1.67
SOX3P41225 BNIP3P19-201ENST00000605397 577 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AL645927.2-201ENST00000618350 349 ntBASIC4.59□□□□□ -1.67
SOX3P41225 AC092159.4-201ENST00000624944 550 ntBASIC4.59□□□□□ -1.67
SOX3P41225 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.59□□□□□ -1.67
SOX3P41225 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.68
SOX3P41225 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
SOX3P41225 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
SOX3P41225 CDC27P2-201ENST00000425026 1922 ntBASIC4.58□□□□□ -1.68
SOX3P41225 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 AC019072.1-201ENST00000604535 1551 ntBASIC4.58□□□□□ -1.68
SOX3P41225 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
SOX3P41225 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
SOX3P41225 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.58□□□□□ -1.68
SOX3P41225 RN7SKP149-201ENST00000363008 344 ntBASIC4.58□□□□□ -1.68
SOX3P41225 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 AL139128.1-201ENST00000413921 941 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AL121882.1-201ENST00000422893 417 ntBASIC4.58□□□□□ -1.68
SOX3P41225 ELOCP3-201ENST00000439303 348 ntBASIC4.58□□□□□ -1.68
SOX3P41225 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 AC073648.4-201ENST00000442655 781 ntBASIC4.58□□□□□ -1.68
SOX3P41225 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC4.58□□□□□ -1.68
SOX3P41225 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 MTND2P6-201ENST00000455337 1030 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC112206.1-201ENST00000468416 477 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC078857.1-201ENST00000469870 667 ntBASIC4.58□□□□□ -1.68
SOX3P41225 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX3P41225 RPL23AP73-201ENST00000492507 471 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC104629.1-201ENST00000494226 508 ntBASIC4.58□□□□□ -1.68
SOX3P41225 RN7SL591P-201ENST00000496150 292 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC073358.1-201ENST00000505671 684 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC021146.7-201ENST00000509604 775 ntBASIC4.58□□□□□ -1.68
SOX3P41225 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SOX3P41225 RN7SKP46-201ENST00000515942 234 ntBASIC4.58□□□□□ -1.68
SOX3P41225 SNORA76.2-201ENST00000517095 137 ntBASIC4.58□□□□□ -1.68
SOX3P41225 VTA1P2-201ENST00000520205 911 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX3P41225 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX3P41225 AC005868.1-201ENST00000536421 331 ntBASIC4.58□□□□□ -1.68
SOX3P41225 GCSHP4-201ENST00000538792 439 ntBASIC4.58□□□□□ -1.68
SOX3P41225 NOP56P3-201ENST00000549457 385 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AL512310.9-201ENST00000553311 948 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC009117.1-201ENST00000563948 554 ntBASIC4.58□□□□□ -1.68
SOX3P41225 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.58□□□□□ -1.68
SOX3P41225 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms