Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 AC090772.4-201ENST00000623599 362 ntBASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 AC079298.2-201ENST00000623885 459 ntBASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 AC004817.4-201ENST00000602396 3625 ntBASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SNX9Q9Y5X1 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC099654.2-201ENST00000433031 1980 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC083843.3-201ENST00000623679 2186 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 GCNT6-201ENST00000379591 934 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 MIR620-201ENST00000385232 95 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 UQCRFS1P3-201ENST00000407697 385 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 RN7SKP16-201ENST00000410180 299 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 MTND4P24-201ENST00000424002 397 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 NPM1P33-201ENST00000438918 872 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 RPS3AP53-201ENST00000454716 778 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 EIF2S2P5-201ENST00000457635 968 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC078857.1-201ENST00000469870 667 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC018442.3-201ENST00000523025 183 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 BRD9P1-201ENST00000529855 560 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 OR5D15P-201ENST00000531671 942 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 PCNPP1-201ENST00000552501 511 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 EDDM3DP-201ENST00000554692 434 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 CD24P2-201ENST00000565486 219 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 TVP23CP2-201ENST00000571473 623 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AL133247.2-201ENST00000603236 482 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC087783.2-201ENST00000605070 562 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC005084.1-201ENST00000605160 304 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AP001521.2-201ENST00000608772 546 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC004948.1-201ENST00000609858 672 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AL049539.1-201ENST00000611964 459 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 AC097460.3-201ENST00000623099 442 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 VPS35P1-201ENST00000563400 1518 ntBASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SNX9Q9Y5X1 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 BTBD10P1-201ENST00000549824 1352 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 SNORA63.3-201ENST00000362682 132 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 RNA5SP105-201ENST00000391123 113 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 AL133270.1-201ENST00000402635 279 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 RSL24D1P1-201ENST00000404972 493 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 RPL34P6-201ENST00000432390 345 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 AC092447.2-201ENST00000435487 669 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 RPL31P20-201ENST00000449593 360 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 SBDSP1-204ENST00000453858 737 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 FCF1P6-201ENST00000456841 595 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 RN7SL346P-201ENST00000491561 294 ntBASIC5.3□□□□□ -1.56
SNX9Q9Y5X1 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC5.3□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 98.4 ms