Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC008280.1-201ENST00000418851 412 ntBASIC6.41□□□□□ -1.38
MSH6P52701 AC092162.1-201ENST00000432828 434 ntBASIC6.41□□□□□ -1.38
MSH6P52701 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
MSH6P52701 AC006326.1-201ENST00000445465 787 ntBASIC6.41□□□□□ -1.38
MSH6P52701 AC090142.1-201ENST00000465776 462 ntBASIC6.41□□□□□ -1.38
MSH6P52701 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC6.41□□□□□ -1.38
MSH6P52701 ENPP7P11-201ENST00000505915 627 ntBASIC6.41□□□□□ -1.38
MSH6P52701 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 AL139254.3-201ENST00000641097 674 ntBASIC6.41□□□□□ -1.38
MSH6P52701 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
MSH6P52701 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.38
MSH6P52701 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC6.4□□□□□ -1.38
MSH6P52701 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC6.4□□□□□ -1.38
MSH6P52701 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSH6P52701 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.4□□□□□ -1.38
MSH6P52701 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.4□□□□□ -1.38
MSH6P52701 EIF2AP4-201ENST00000424793 1781 ntBASIC6.4□□□□□ -1.38
MSH6P52701 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC6.4□□□□□ -1.38
MSH6P52701 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
MSH6P52701 OR5P1P-201ENST00000299512 925 ntBASIC6.4□□□□□ -1.39
MSH6P52701 AL117339.2-201ENST00000430475 180 ntBASIC6.4□□□□□ -1.39
MSH6P52701 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC6.4□□□□□ -1.39
MSH6P52701 SETP4-201ENST00000455717 868 ntBASIC6.4□□□□□ -1.39
MSH6P52701 DSTNP2-201ENST00000504533 515 ntBASIC6.4□□□□□ -1.39
MSH6P52701 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC6.4□□□□□ -1.39
MSH6P52701 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC6.4□□□□□ -1.39
MSH6P52701 PYM1-205ENST00000547925 499 ntTSL 3 BASIC6.4□□□□□ -1.39
MSH6P52701 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC6.4□□□□□ -1.39
MSH6P52701 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
MSH6P52701 BNIP3P19-201ENST00000605397 577 ntBASIC6.4□□□□□ -1.39
MSH6P52701 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
MSH6P52701 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
MSH6P52701 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
MSH6P52701 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC6.4□□□□□ -1.39
MSH6P52701 AL450345.1-202ENST00000605741 3881 ntBASIC6.39□□□□□ -1.39
MSH6P52701 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
MSH6P52701 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
MSH6P52701 5S_rRNA.1-201ENST00000364415 116 ntBASIC6.39□□□□□ -1.39
MSH6P52701 EIF4EBP2P3-201ENST00000403144 334 ntBASIC6.39□□□□□ -1.39
MSH6P52701 RN7SKP159-201ENST00000410657 292 ntBASIC6.39□□□□□ -1.39
MSH6P52701 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSH6P52701 COX6CP15-201ENST00000426313 211 ntBASIC6.39□□□□□ -1.39
MSH6P52701 VTI1BP4-201ENST00000427516 527 ntBASIC6.39□□□□□ -1.39
MSH6P52701 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC6.39□□□□□ -1.39
MSH6P52701 RPL21P89-201ENST00000444021 467 ntBASIC6.39□□□□□ -1.39
MSH6P52701 DEFB109A-201ENST00000482450 265 ntBASIC6.39□□□□□ -1.39
MSH6P52701 NPM1P28-201ENST00000492269 840 ntBASIC6.39□□□□□ -1.39
MSH6P52701 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC6.39□□□□□ -1.39
MSH6P52701 SCARNA13-201ENST00000516672 275 ntBASIC6.39□□□□□ -1.39
MSH6P52701 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC6.39□□□□□ -1.39
MSH6P52701 TRAV8-5-201ENST00000537369 341 ntBASIC6.39□□□□□ -1.39
MSH6P52701 AC010547.7-201ENST00000570323 333 ntBASIC6.39□□□□□ -1.39
MSH6P52701 LGI1-209ENST00000627699 664 ntTSL 3 BASIC6.39□□□□□ -1.39
MSH6P52701 CDRT1-208ENST00000630868 794 ntBASIC6.39□□□□□ -1.39
MSH6P52701 FRG1EP-201ENST00000634469 770 ntBASIC6.39□□□□□ -1.39
MSH6P52701 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC6.39□□□□□ -1.39
MSH6P52701 AC009643.2-201ENST00000603543 1448 ntBASIC6.39□□□□□ -1.39
MSH6P52701 AC004656.1-201ENST00000568479 4951 ntBASIC6.39□□□□□ -1.39
MSH6P52701 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
MSH6P52701 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC6.39□□□□□ -1.39
MSH6P52701 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC6.39□□□□□ -1.39
MSH6P52701 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.39□□□□□ -1.39
MSH6P52701 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
MSH6P52701 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSH6P52701 AC106871.1-201ENST00000568324 3102 ntBASIC6.38□□□□□ -1.39
MSH6P52701 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC6.38□□□□□ -1.39
MSH6P52701 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC6.38□□□□□ -1.39
MSH6P52701 LARP1BP1-201ENST00000506036 1359 ntBASIC6.38□□□□□ -1.39
MSH6P52701 AC022417.1-201ENST00000624768 1303 ntBASIC6.38□□□□□ -1.39
MSH6P52701 CRYBB2P1-203ENST00000415709 538 ntBASIC6.38□□□□□ -1.39
MSH6P52701 RPL7P2-201ENST00000427639 268 ntBASIC6.38□□□□□ -1.39
MSH6P52701 PRSS3P4-201ENST00000453323 162 ntBASIC6.38□□□□□ -1.39
MSH6P52701 AC245028.2-201ENST00000458673 253 ntBASIC6.38□□□□□ -1.39
MSH6P52701 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC6.38□□□□□ -1.39
MSH6P52701 AC020890.1-201ENST00000491837 504 ntBASIC6.38□□□□□ -1.39
MSH6P52701 MYL12BP2-201ENST00000503948 512 ntBASIC6.38□□□□□ -1.39
MSH6P52701 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC6.38□□□□□ -1.39
MSH6P52701 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSH6P52701 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC6.38□□□□□ -1.39
MSH6P52701 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC6.38□□□□□ -1.39
MSH6P52701 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC6.38□□□□□ -1.39
MSH6P52701 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
MSH6P52701 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH6P52701 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH6P52701 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.37□□□□□ -1.39
MSH6P52701 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
MSH6P52701 RNU1-130P-201ENST00000363930 160 ntBASIC6.37□□□□□ -1.39
MSH6P52701 RPS27AP11-201ENST00000402798 447 ntBASIC6.37□□□□□ -1.39
MSH6P52701 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH6P52701 AL356095.1-201ENST00000417217 199 ntBASIC6.37□□□□□ -1.39
MSH6P52701 ARAFP2-201ENST00000440565 559 ntBASIC6.37□□□□□ -1.39
MSH6P52701 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH6P52701 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
MSH6P52701 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC6.37□□□□□ -1.39
MSH6P52701 AL049874.2-201ENST00000492636 288 ntBASIC6.37□□□□□ -1.39
MSH6P52701 AC006499.6-201ENST00000511169 607 ntBASIC6.37□□□□□ -1.39
MSH6P52701 AC108064.1-201ENST00000513791 460 ntBASIC6.37□□□□□ -1.39
MSH6P52701 AC090515.3-201ENST00000560431 315 ntBASIC6.37□□□□□ -1.39
MSH6P52701 AC104574.1-201ENST00000561182 925 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms