Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC073869.7-201ENST00000640874 297 ntBASIC6.58□□□□□ -1.36
LIG3P49916 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 ARPP21-204ENST00000412048 2506 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 MBNL3-206ENST00000394311 11263 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
LIG3P49916 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
LIG3P49916 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.58□□□□□ -1.36
LIG3P49916 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 RRN3P1-201ENST00000514813 3645 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 SPP1-202ENST00000360804 1196 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 RNA5SP88-201ENST00000365560 109 ntBASIC6.57□□□□□ -1.36
LIG3P49916 RNU6-259P-201ENST00000383999 107 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AL136131.1-201ENST00000406079 803 ntBASIC6.57□□□□□ -1.36
LIG3P49916 RN7SKP221-201ENST00000410420 301 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AL596448.1-201ENST00000415024 392 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.57□□□□□ -1.36
LIG3P49916 AL354868.1-201ENST00000417077 482 ntBASIC6.57□□□□□ -1.36
LIG3P49916 RPL21P32-201ENST00000419877 477 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 OFD1P12Y-201ENST00000427963 1207 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AL513175.1-201ENST00000431492 780 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AL590399.4-201ENST00000436561 601 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AL357140.2-201ENST00000445884 440 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 RBMY2TP-201ENST00000451162 947 ntBASIC6.57□□□□□ -1.36
LIG3P49916 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 AL133351.3-201ENST00000454998 193 ntBASIC6.57□□□□□ -1.36
LIG3P49916 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 AC090013.1-201ENST00000485147 480 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC114728.1-201ENST00000488289 483 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC6.57□□□□□ -1.36
LIG3P49916 RN7SKP298-201ENST00000515950 94 ntBASIC6.57□□□□□ -1.36
LIG3P49916 SCARNA5-201ENST00000516201 276 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 IGHV1-14-201ENST00000523391 241 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC023245.2-201ENST00000530760 2978 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC007207.2-201ENST00000543206 542 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC6.57□□□□□ -1.36
LIG3P49916 PSMB7P1-201ENST00000556349 514 ntBASIC6.57□□□□□ -1.36
LIG3P49916 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 TSSK4-207ENST00000556621 896 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 ZNF519P2-201ENST00000557032 169 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC009063.1-201ENST00000563342 702 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG3P49916 AC007496.2-201ENST00000564801 547 ntTSL 4 BASIC6.57□□□□□ -1.36
LIG3P49916 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 RN7SL208P-201ENST00000577964 296 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AC022884.3-201ENST00000579571 248 ntBASIC6.57□□□□□ -1.36
LIG3P49916 SYPL1P2-201ENST00000582878 727 ntBASIC6.57□□□□□ -1.36
LIG3P49916 MIR7515HG-239ENST00000591053 1113 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 AC011500.1-201ENST00000601963 469 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AP000403.1-201ENST00000603349 851 ntBASIC6.57□□□□□ -1.36
LIG3P49916 AF250324.2-201ENST00000608299 610 ntBASIC6.57□□□□□ -1.36
LIG3P49916 CDR1-202ENST00000625883 1485 ntBASIC6.57□□□□□ -1.36
LIG3P49916 SLCO1C1-207ENST00000540354 2529 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG3P49916 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
LIG3P49916 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 SULT1C2-205ENST00000437390 1359 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG3P49916 KLHL2-210ENST00000538127 2907 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG3P49916 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
LIG3P49916 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
LIG3P49916 DBF4P1-201ENST00000412976 1892 ntBASIC6.56□□□□□ -1.36
LIG3P49916 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 TEX21P-201ENST00000447107 1476 ntBASIC6.56□□□□□ -1.36
LIG3P49916 SMG1P5-202ENST00000529428 4219 ntBASIC6.56□□□□□ -1.36
LIG3P49916 SMG1P2-201ENST00000566127 4221 ntBASIC6.56□□□□□ -1.36
LIG3P49916 ZNF404-201ENST00000324394 1844 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG3P49916 RNU1-84P-201ENST00000365447 164 ntBASIC6.56□□□□□ -1.36
LIG3P49916 TINAG-202ENST00000370864 692 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG3P49916 RNY3P14-201ENST00000384309 102 ntBASIC6.56□□□□□ -1.36
LIG3P49916 RNU6-348P-201ENST00000384386 107 ntBASIC6.56□□□□□ -1.36
LIG3P49916 RN7SKP56-201ENST00000410513 331 ntBASIC6.56□□□□□ -1.36
LIG3P49916 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 136.6 ms