Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA1P49639 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA1P49639 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC4.45□□□□□ -1.7
HOXA1P49639 AC021146.3-201ENST00000511911 260 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA1P49639 RN7SKP70-201ENST00000516655 271 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 RNA5SP340-201ENST00000517132 107 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA1P49639 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 TRIM51DP-201ENST00000529746 596 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA1P49639 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.45□□□□□ -1.7
HOXA1P49639 AL133371.1-201ENST00000555481 764 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA1P49639 SNORD39.2-201ENST00000579995 76 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.45□□□□□ -1.7
HOXA1P49639 RNF138P2-201ENST00000603490 592 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 AC124916.2-201ENST00000604416 224 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 TAS2R6P-201ENST00000605022 826 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 MIR8069-1-201ENST00000616627 86 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 AL355493.4-201ENST00000618530 292 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 MIR8069-2-201ENST00000621412 86 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 MIR6806-201ENST00000622141 64 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 AP000676.4-201ENST00000624659 623 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
HOXA1P49639 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA1P49639 CU459211.1-201ENST00000635667 749 ntBASIC4.45□□□□□ -1.7
HOXA1P49639 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
HOXA1P49639 PRKCH-228ENST00000640011 285 ntTSL 5 BASIC4.45□□□□□ -1.7
HOXA1P49639 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
HOXA1P49639 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.45□□□□□ -1.7
HOXA1P49639 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXA1P49639 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 GPR89A-213ENST00000534502 1644 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA1P49639 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 GAPDHP24-201ENST00000328713 983 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 RNA5SP132-201ENST00000364725 118 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 PPIAP9-201ENST00000403866 498 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 USP9YP21-201ENST00000420603 432 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC005005.2-201ENST00000420779 380 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 DNAJA1P1-201ENST00000425106 1187 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA1P49639 AL035246.1-201ENST00000433554 1255 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC090018.1-201ENST00000434369 367 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC133473.1-201ENST00000455173 299 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 ACA64.1-201ENST00000459171 127 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC021006.1-201ENST00000489849 553 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC138866.2-201ENST00000508650 584 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC147055.3-201ENST00000510547 851 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA1P49639 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 AC027369.2-201ENST00000528030 440 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC022509.3-201ENST00000535914 436 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 SPIC-201ENST00000551346 1132 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.44□□□□□ -1.7
HOXA1P49639 IMMP1LP3-201ENST00000604197 224 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA1P49639 AP001437.1-201ENST00000608783 456 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 PART1_2.1-201ENST00000612397 250 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 SNX18P1Y-201ENST00000616231 511 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.44□□□□□ -1.7
HOXA1P49639 AP002791.1-201ENST00000623291 381 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC104985.3-201ENST00000623479 597 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC129778.1-202ENST00000623812 261 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AL591379.1-207ENST00000635982 261 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AMYH02020865.1-205ENST00000636189 261 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 AC017104.5-201ENST00000637647 639 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC139713.2-210ENST00000641741 992 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA1P49639 AC090181.3-201ENST00000624777 1514 ntBASIC4.44□□□□□ -1.7
HOXA1P49639 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA1P49639 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 94.4 ms