Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXC9P31274 AC011933.1-201ENST00000413334 321 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXC9P31274 AL139095.3-201ENST00000419672 1203 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 RPL17P36-201ENST00000420302 549 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 CKS1BP6-201ENST00000424932 240 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 ACTR3P2-201ENST00000439585 1257 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXC9P31274 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXC9P31274 DHFRP3-201ENST00000455595 559 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AC116533.1-201ENST00000459748 321 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AC090589.1-201ENST00000473109 362 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AC041039.1-201ENST00000485656 536 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 MRPL49P2-201ENST00000521066 465 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXC9P31274 TRAV8-5-201ENST00000537369 341 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AP000619.2-201ENST00000546014 969 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXC9P31274 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXC9P31274 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC6.06□□□□□ -1.44
HOXC9P31274 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
HOXC9P31274 AC245128.3-201ENST00000594721 748 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 AL020997.2-201ENST00000602607 184 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
HOXC9P31274 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC6.06□□□□□ -1.44
HOXC9P31274 TTC41P-205ENST00000551270 3963 ntBASIC6.06□□□□□ -1.44
HOXC9P31274 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXC9P31274 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
HOXC9P31274 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.06□□□□□ -1.44
HOXC9P31274 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC6.06□□□□□ -1.44
HOXC9P31274 AC005261.2-201ENST00000593427 4258 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
HOXC9P31274 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 OR5P1P-201ENST00000299512 925 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 SNORA5.1-201ENST00000384275 131 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 SNORA57.1-201ENST00000391227 145 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXC9P31274 RPS12P10-201ENST00000427031 377 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 PHBP16-201ENST00000446318 950 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 HMGN1P8-201ENST00000463578 288 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 RPL7P19-201ENST00000469948 618 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.05□□□□□ -1.44
HOXC9P31274 AC093824.1-201ENST00000508796 343 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXC9P31274 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC6.05□□□□□ -1.44
HOXC9P31274 AC134698.5-201ENST00000519444 336 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 AC023389.2-201ENST00000580031 955 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXC9P31274 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXC9P31274 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXC9P31274 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXC9P31274 MIR6891-201ENST00000618788 93 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC6.05□□□□□ -1.44
HOXC9P31274 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 CASC19-255ENST00000641733 1385 ntBASIC6.05□□□□□ -1.44
HOXC9P31274 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC6.05□□□□□ -1.44
HOXC9P31274 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
HOXC9P31274 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXC9P31274 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXC9P31274 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXC9P31274 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
HOXC9P31274 AC120036.2-201ENST00000509729 1474 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXC9P31274 AC100778.3-201ENST00000580060 1750 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXC9P31274 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
HOXC9P31274 RNA5SP366-201ENST00000365454 123 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 NPM1P38-201ENST00000403835 865 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 RN7SKP263-201ENST00000411194 309 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 RPL23AP26-201ENST00000412728 464 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC6.04□□□□□ -1.44
HOXC9P31274 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXC9P31274 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC6.04□□□□□ -1.44
HOXC9P31274 AC011998.1-201ENST00000433403 117 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 CYP3A43-210ENST00000444905 733 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXC9P31274 HESX1-202ENST00000473921 757 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXC9P31274 TRBV8-1-201ENST00000481590 279 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 MTCO1P35-201ENST00000515270 228 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.04□□□□□ -1.44
HOXC9P31274 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC6.04□□□□□ -1.44
HOXC9P31274 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC6.04□□□□□ -1.44
HOXC9P31274 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 LINC01808-202ENST00000641680 1116 ntBASIC6.04□□□□□ -1.44
HOXC9P31274 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
HOXC9P31274 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.04□□□□□ -1.44
HOXC9P31274 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.04□□□□□ -1.44
HOXC9P31274 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
HOXC9P31274 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
HOXC9P31274 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXC9P31274 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
HOXC9P31274 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
HOXC9P31274 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms