Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AC004836.1-201ENST00000623032 634 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL6A1P12109 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 DMD-228ENST00000541735 7080 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 TRIM51GP-201ENST00000534741 1350 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC6.31□□□□□ -1.4
COL6A1P12109 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.31□□□□□ -1.4
COL6A1P12109 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.31□□□□□ -1.4
COL6A1P12109 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL6A1P12109 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 CASC19-284ENST00000642142 1868 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 ZNF736P9Y-201ENST00000439586 1345 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 ZNF542P-204ENST00000482727 1305 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 NDUFS1-205ENST00000449699 2371 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL6A1P12109 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC6.3□□□□□ -1.4
COL6A1P12109 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6.3□□□□□ -1.4
COL6A1P12109 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.3□□□□□ -1.4
COL6A1P12109 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 RNU6-252P-201ENST00000363232 107 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 RNU6-236P-201ENST00000363886 106 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 Y_RNA.578-201ENST00000390903 88 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 AC233289.1-201ENST00000403700 508 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC6.3□□□□□ -1.4
COL6A1P12109 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC6.3□□□□□ -1.4
COL6A1P12109 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 AL049745.1-201ENST00000433953 286 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 AL731534.1-201ENST00000434711 269 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 RPS27P5-201ENST00000444247 244 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 MTND2P19-201ENST00000449129 1012 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 MRPL35P4-201ENST00000453682 566 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 RNU5A-4P-201ENST00000516588 111 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC087897.1-201ENST00000550134 156 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.3□□□□□ -1.4
COL6A1P12109 CBX3P2-202ENST00000583365 535 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 AC004492.1-201ENST00000607036 742 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 AL121895.2-201ENST00000619558 447 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 AL356473.1-201ENST00000406203 1408 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 MFSD8-219ENST00000641228 2559 ntBASIC6.3□□□□□ -1.4
COL6A1P12109 ZNF737-201ENST00000427401 2867 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
COL6A1P12109 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
COL6A1P12109 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.3□□□□□ -1.4
COL6A1P12109 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC6.29□□□□□ -1.4
COL6A1P12109 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
COL6A1P12109 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
COL6A1P12109 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
COL6A1P12109 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
COL6A1P12109 AC116036.1-201ENST00000412199 367 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC6.29□□□□□ -1.4
COL6A1P12109 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 VDAC1P6-201ENST00000430062 855 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC006335.2-201ENST00000437993 330 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AL445567.1-201ENST00000439121 144 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 OSBPL10-AS1-205ENST00000444503 526 ntTSL 4 BASIC6.29□□□□□ -1.4
COL6A1P12109 AL035551.1-201ENST00000446931 348 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC6.29□□□□□ -1.4
COL6A1P12109 MRPL42P4-201ENST00000453267 443 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AL603882.1-201ENST00000463059 681 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.29□□□□□ -1.4
COL6A1P12109 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC6.29□□□□□ -1.4
COL6A1P12109 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 MAL2-207ENST00000522828 603 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC6.29□□□□□ -1.4
COL6A1P12109 OR5AM1P-201ENST00000532136 1032 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.29□□□□□ -1.4
COL6A1P12109 BLZF2P-201ENST00000553776 1130 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC090695.1-201ENST00000561269 1222 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 LINC02131-201ENST00000563289 419 ntTSL 2 BASIC6.29□□□□□ -1.4
COL6A1P12109 AC012213.3-201ENST00000577199 777 ntBASIC6.29□□□□□ -1.4
COL6A1P12109 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms