Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 OR4F13P-202ENST00000560066 2054 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC107021.2-201ENST00000567714 2095 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL359955.1-201ENST00000455242 3275 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC010132.2-201ENST00000295493 1043 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RNA5SP234-201ENST00000363916 119 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RN7SKP247-201ENST00000411094 308 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 HMGB1P49-201ENST00000418882 569 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL355433.1-201ENST00000422804 300 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC092017.2-201ENST00000427600 362 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC084290.1-201ENST00000434995 374 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC000041.1-201ENST00000439655 175 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RANP1-206ENST00000455094 651 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC010468.1-201ENST00000461022 817 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RPL35AP19-201ENST00000469425 329 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RN7SL860P-201ENST00000473738 223 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC231760.1-201ENST00000498002 260 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC010486.3-201ENST00000511602 785 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC093752.1-206ENST00000511823 336 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 OR4A43P-201ENST00000532938 908 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 MTND4P33-201ENST00000556706 766 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC044860.2-201ENST00000561005 179 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC233702.9-201ENST00000581528 203 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC024060.1-201ENST00000607052 494 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 MIR6748-201ENST00000610433 71 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC007204.2-201ENST00000615022 616 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AL118522.2-201ENST00000616045 615 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 RMST_10.1-201ENST00000616309 154 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC018445.2-201ENST00000622987 260 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC004817.4-201ENST00000602396 3625 ntBASIC5.59□□□□□ -1.51
DKK3Q9UBP4 AC079298.1-201ENST00000625026 1619 ntBASIC5.59□□□□□ -1.52
DKK3Q9UBP4 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
DKK3Q9UBP4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
DKK3Q9UBP4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 SUCLA2P2-201ENST00000417269 1309 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 PEAK1-204ENST00000560626 19217 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RNA5SP326-201ENST00000363209 110 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RNU5B-1-201ENST00000363286 116 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RNU6-236P-201ENST00000363886 106 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC104297.1-201ENST00000393779 870 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AL669831.5-220ENST00000412115 581 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 XKRYP4-201ENST00000414395 483 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 PNRC2P1-201ENST00000423940 420 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 NPM1P33-201ENST00000438918 872 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC073850.1-201ENST00000449243 255 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 XKRYP5-201ENST00000449659 483 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 CYCSP42-201ENST00000450823 238 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RN7SL51P-201ENST00000468230 285 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 PRDX3P4-201ENST00000470828 747 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 EIF3LP3-201ENST00000495197 822 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 RPS17P5-201ENST00000498293 408 ntBASIC5.58□□□□□ -1.52
DKK3Q9UBP4 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.58□□□□□ -1.52
DKK3Q9UBP4 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms