Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC006206.1-201ENST00000544842 3387 ntBASIC5.39□□□□□ -1.55
PTCHD3Q3KNS1 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD3Q3KNS1 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
PTCHD3Q3KNS1 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 PROS2P-201ENST00000474651 1951 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ABCC13-202ENST00000463099 3842 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-543P-201ENST00000362576 108 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RN7SKP162-201ENST00000363605 345 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-353P-201ENST00000364266 108 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 SNORD116-2-201ENST00000384274 95 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 SNORD116-6-201ENST00000384711 96 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-1320P-201ENST00000390838 107 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-1269P-201ENST00000391139 107 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL035419.1-201ENST00000397037 564 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 NPM1P4-201ENST00000414095 812 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL133482.1-201ENST00000415988 498 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 Z75741.2-201ENST00000417272 1167 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL133173.1-201ENST00000423458 397 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 DIAPH3-AS1-203ENST00000435636 467 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 VDAC2P4-201ENST00000452925 711 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 SATB1-AS1-204ENST00000453361 726 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-599P-201ENST00000459383 107 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-1193P-201ENST00000459461 107 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL133445.1-201ENST00000467051 452 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RPL35AP19-201ENST00000469425 329 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 NDUFA5P9-201ENST00000472609 340 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC108693.1-201ENST00000496068 432 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC082651.2-201ENST00000496833 166 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 SNORA3.4-201ENST00000515969 96 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 PIH1D2-206ENST00000528775 1025 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC025260.1-201ENST00000548858 430 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ZNF321P-202ENST00000550843 495 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 CYP2C60P-201ENST00000566088 139 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 MRPS21P7-201ENST00000566937 238 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC009948.4-201ENST00000604692 675 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL445423.1-201ENST00000609941 536 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL356274.1-201ENST00000617064 410 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-368P-201ENST00000620928 107 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 RNU6-538P-201ENST00000622329 107 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC079097.1-201ENST00000512187 1399 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AC111188.2-201ENST00000529697 1387 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 GTF2H2B-203ENST00000508065 1432 ntBASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.38□□□□□ -1.55
PTCHD3Q3KNS1 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 SNORD116-8-201ENST00000384365 95 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 MIR137-201ENST00000385223 102 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 GAPDHP42-201ENST00000406848 981 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 MIR1178-201ENST00000408396 91 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 ZDHHC20P2-201ENST00000424108 429 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 RPF2P1-201ENST00000424137 906 ntBASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.37□□□□□ -1.55
PTCHD3Q3KNS1 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms