Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNA5SP326-201ENST00000363209 110 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 RNU6-354P-201ENST00000383862 107 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 RNU6-610P-201ENST00000384264 107 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 MIR23B-201ENST00000384832 97 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AL049693.1-201ENST00000402760 611 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 HMGB3P19-201ENST00000403971 560 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AL034374.1-201ENST00000406329 351 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 MIR1193-201ENST00000408109 78 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 STAT4-203ENST00000409995 709 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 RNU2-50P-201ENST00000410494 143 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 MTCO1P43-201ENST00000431831 488 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AL035458.1-201ENST00000433096 585 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 CYCSP42-201ENST00000450823 238 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 RPS20P4-201ENST00000461659 355 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 PPM1AP1-201ENST00000502740 1135 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 OR5H3P-201ENST00000502817 919 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC093801.2-201ENST00000503966 1050 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 NAMPTP2-201ENST00000505629 1115 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 EIF3KP3-201ENST00000514461 639 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 SNORA31.13-201ENST00000516624 135 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC100784.1-201ENST00000522790 310 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 OR8A2P-201ENST00000528631 952 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AP000916.1-201ENST00000533869 835 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AL109741.3-201ENST00000561748 592 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC068620.3-201ENST00000602749 560 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC026790.2-201ENST00000606282 430 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 MKKS-203ENST00000609375 882 ntTSL 2 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC109583.2-201ENST00000617367 129 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC009269.6-201ENST00000621778 588 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.14□□□□□ -1.59
COL28A1Q2UY09 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL28A1Q2UY09 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC093849.1-201ENST00000563631 2209 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC091046.3-201ENST00000631455 1574 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AL121886.1-201ENST00000358609 435 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 RN7SKP227-201ENST00000364445 330 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 RPS27AP11-201ENST00000402798 447 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AL133388.1-201ENST00000404509 287 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AL136131.1-201ENST00000406079 803 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 RNA5SP498-201ENST00000411342 120 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 RNF10P1-201ENST00000418589 369 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 OR10T1P-201ENST00000424327 947 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 MGAT2P2-201ENST00000427194 797 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 TCEA1P3-201ENST00000443005 880 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC009127.1-201ENST00000467090 155 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 GAPDHP62-201ENST00000515313 990 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 HMGB1P23-201ENST00000518743 568 ntBASIC5.13□□□□□ -1.59
COL28A1Q2UY09 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC5.13□□□□□ -1.59
COL28A1Q2UY09 HIGD1AP18-201ENST00000520730 278 ntBASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms