Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 CDH12P2-201ENST00000504393 298 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 RNU1-95P-201ENST00000516357 160 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 RNU1-128P-201ENST00000516704 160 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 Y_RNA.719-201ENST00000517156 106 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 SNORA70.24-201ENST00000517233 118 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC024224.1-201ENST00000538284 609 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC113403.1-201ENST00000604910 193 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC140113.4-201ENST00000622087 222 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC006453.5-201ENST00000636451 619 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 CHRM3-201ENST00000255380 8780 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HSPG2P98160 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HSPG2P98160 ADTRP-201ENST00000229583 891 ntTSL 2 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC2.72□□□□□ -1.97
HSPG2P98160 AL358832.1-201ENST00000497800 389 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 MTND4LP31-201ENST00000514859 294 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC2.72□□□□□ -1.97
HSPG2P98160 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC008549.2-201ENST00000333482 706 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 SNORA5A-201ENST00000384111 134 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 RNU11-4P-201ENST00000391149 133 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC115285.1-201ENST00000424879 736 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AL157831.1-201ENST00000426134 473 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC104651.2-201ENST00000447549 528 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HSPG2P98160 RPL37P3-201ENST00000456825 293 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC2.72□□□□□ -1.97
HSPG2P98160 OR8Q1P-201ENST00000526467 655 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AC115621.1-201ENST00000604653 858 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 AP001002.2-201ENST00000625137 386 ntBASIC2.72□□□□□ -1.97
HSPG2P98160 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
HSPG2P98160 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC2.72□□□□□ -1.97
HSPG2P98160 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
HSPG2P98160 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC2.71□□□□□ -1.97
HSPG2P98160 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC2.71□□□□□ -1.97
HSPG2P98160 TTC41P-205ENST00000551270 3963 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 GFPT1-202ENST00000361060 8632 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 OR4A15-201ENST00000314706 1035 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 RNA5SP453-201ENST00000362503 119 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 RNA5SP513-201ENST00000364648 118 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 Y_RNA.500-201ENST00000384466 111 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.71□□□□□ -1.98
HSPG2P98160 PTMAP3-201ENST00000447474 330 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 RN7SL323P-201ENST00000494712 295 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC2.71□□□□□ -1.98
HSPG2P98160 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 LDHAL6CP-202ENST00000550738 3224 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 CCNT1-201ENST00000261900 6973 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 TET1P1-201ENST00000426627 2301 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 MED23-203ENST00000368058 4576 ntTSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 MIR331-201ENST00000362302 94 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 RNA5SP151-201ENST00000365632 117 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 AP000357.1-201ENST00000409926 1165 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 RPL7P2-201ENST00000427639 268 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 AL049873.1-201ENST00000480540 376 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 ENSA-211ENST00000503345 793 ntTSL 3 BASIC2.71□□□□□ -1.98
HSPG2P98160 AL513477.2-201ENST00000607858 568 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 AL450472.3-201ENST00000615578 367 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 AL034408.1-202ENST00000636088 415 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
HSPG2P98160 SLC7A14-201ENST00000231706 10103 ntAPPRIS P1 TSL 2 BASIC2.71□□□□□ -1.98
HSPG2P98160 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC2.71□□□□□ -1.98
HSPG2P98160 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 LCMT1-AS2-202ENST00000565214 5666 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
HSPG2P98160 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC2.71□□□□□ -1.98
HSPG2P98160 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC2.71□□□□□ -1.98
HSPG2P98160 AL390879.2-203ENST00000426943 1121 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC2.71□□□□□ -1.98
HSPG2P98160 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.71□□□□□ -1.98
HSPG2P98160 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 AC016588.2-201ENST00000632484 3021 ntBASIC2.71□□□□□ -1.98
HSPG2P98160 HTR2C-202ENST00000371950 4652 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC2.71□□□□□ -1.98
HSPG2P98160 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms