Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TINAG-201ENST00000259782 1754 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
CCDC88AQ3V6T2 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC026726.1-201ENST00000512859 601 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AL133243.1-201ENST00000614487 366 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 OR8G2P-201ENST00000412796 908 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 MTND4LP2-201ENST00000502312 285 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 MIR4472-2-201ENST00000582069 67 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC010503.3-201ENST00000594355 540 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AL049840.6-202ENST00000603373 279 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC018628.1-201ENST00000624147 3819 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AC003985.2-201ENST00000562268 1669 ntBASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC88AQ3V6T2 AL445487.1-201ENST00000415694 1580 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AC005261.2-201ENST00000593427 4258 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 MIR372-201ENST00000362225 67 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 MIR554-201ENST00000384874 96 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 PPIAP31-201ENST00000405422 495 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 U3.35-201ENST00000408405 208 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 SNORA11C-201ENST00000408532 129 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 CTSL3P-202ENST00000412179 788 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 RPL23AP53-201ENST00000521854 457 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 CCNG2P1-201ENST00000549521 1000 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AC090515.3-201ENST00000560431 315 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AP001160.4-201ENST00000596971 382 ntBASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.65□□□□□ -1.5
CCDC88AQ3V6T2 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC88AQ3V6T2 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
CCDC88AQ3V6T2 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC5.65□□□□□ -1.51
CCDC88AQ3V6T2 VN2R3P-201ENST00000422626 1412 ntBASIC5.65□□□□□ -1.51
CCDC88AQ3V6T2 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
CCDC88AQ3V6T2 AL158163.1-201ENST00000603915 1649 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 EIF4HP2-201ENST00000424380 563 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 RPL21P89-201ENST00000444021 467 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 SCARNA10-201ENST00000459255 330 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC020890.1-201ENST00000491837 504 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 Y_RNA.719-201ENST00000517156 106 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC005868.1-201ENST00000536421 331 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC015912.2-201ENST00000571053 181 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 LIN7C-202ENST00000524596 4290 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC090220.1-201ENST00000593078 1699 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 RPS27AP11-201ENST00000402798 447 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC009237.5-201ENST00000414271 501 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AL691449.1-201ENST00000426570 421 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 GCA-203ENST00000429691 824 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 UQCRHP4-201ENST00000471686 272 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 RN7SL558P-201ENST00000497468 299 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC010476.1-201ENST00000519111 851 ntBASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC88AQ3V6T2 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms