Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 MRPL48P1-201ENST00000445390 636 ntBASIC4.49□□□□□ -1.69
LIM2P55344 TDGF1P1-201ENST00000445734 527 ntBASIC4.49□□□□□ -1.69
LIM2P55344 RPL35AP28-201ENST00000459730 331 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 AC105233.1-201ENST00000498840 781 ntBASIC4.49□□□□□ -1.69
LIM2P55344 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 OR7H2P-201ENST00000513483 306 ntBASIC4.49□□□□□ -1.69
LIM2P55344 SOX5P1-201ENST00000524155 1127 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.49□□□□□ -1.69
LIM2P55344 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.49□□□□□ -1.69
LIM2P55344 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC4.49□□□□□ -1.69
LIM2P55344 SNORD39.2-201ENST00000579995 76 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 AC005229.3-201ENST00000603438 323 ntBASIC4.49□□□□□ -1.69
LIM2P55344 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC4.49□□□□□ -1.69
LIM2P55344 AC091953.3-201ENST00000623220 236 ntBASIC4.49□□□□□ -1.69
LIM2P55344 MAPK10-263ENST00000641052 4307 ntBASIC4.49□□□□□ -1.69
LIM2P55344 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 PAN3-202ENST00000399613 4940 ntAPPRIS ALT2 TSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
LIM2P55344 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.49□□□□□ -1.69
LIM2P55344 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.49□□□□□ -1.69
LIM2P55344 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
LIM2P55344 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC4.49□□□□□ -1.69
LIM2P55344 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 RNU1-83P-201ENST00000363426 164 ntBASIC4.48□□□□□ -1.69
LIM2P55344 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.48□□□□□ -1.69
LIM2P55344 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
LIM2P55344 AL590762.2-201ENST00000395798 571 ntBASIC4.48□□□□□ -1.69
LIM2P55344 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC4.48□□□□□ -1.69
LIM2P55344 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.48□□□□□ -1.69
LIM2P55344 BX510359.2-201ENST00000417920 305 ntBASIC4.48□□□□□ -1.69
LIM2P55344 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 AL360081.1-201ENST00000428299 555 ntBASIC4.48□□□□□ -1.69
LIM2P55344 FTLP19-201ENST00000433300 394 ntBASIC4.48□□□□□ -1.69
LIM2P55344 MAPRE1P3-201ENST00000435438 796 ntBASIC4.48□□□□□ -1.69
LIM2P55344 CYCSP11-201ENST00000436426 315 ntBASIC4.48□□□□□ -1.69
LIM2P55344 AC005154.2-201ENST00000438110 379 ntBASIC4.48□□□□□ -1.69
LIM2P55344 AC079168.2-201ENST00000453977 416 ntBASIC4.48□□□□□ -1.69
LIM2P55344 OR9N1P-201ENST00000491296 333 ntBASIC4.48□□□□□ -1.69
LIM2P55344 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.48□□□□□ -1.69
LIM2P55344 AC231760.1-201ENST00000498002 260 ntBASIC4.48□□□□□ -1.69
LIM2P55344 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 AC025187.1-201ENST00000506305 686 ntTSL 3 BASIC4.48□□□□□ -1.69
LIM2P55344 BTG4P1-201ENST00000510421 183 ntBASIC4.48□□□□□ -1.69
LIM2P55344 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 RNA5SP464-201ENST00000516251 108 ntBASIC4.48□□□□□ -1.69
LIM2P55344 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.48□□□□□ -1.69
LIM2P55344 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 AC091042.1-201ENST00000579213 173 ntBASIC4.48□□□□□ -1.69
LIM2P55344 LSM1P2-201ENST00000604911 322 ntBASIC4.48□□□□□ -1.69
LIM2P55344 AL451049.1-201ENST00000608672 497 ntBASIC4.48□□□□□ -1.69
LIM2P55344 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.48□□□□□ -1.69
LIM2P55344 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 ZFRP1-201ENST00000457579 2970 ntBASIC4.48□□□□□ -1.69
LIM2P55344 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 AL445487.1-201ENST00000415694 1580 ntBASIC4.48□□□□□ -1.69
LIM2P55344 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
LIM2P55344 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.48□□□□□ -1.69
LIM2P55344 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIM2P55344 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIM2P55344 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.47□□□□□ -1.69
LIM2P55344 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.47□□□□□ -1.69
LIM2P55344 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIM2P55344 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
LIM2P55344 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIM2P55344 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.47□□□□□ -1.69
LIM2P55344 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.47□□□□□ -1.69
LIM2P55344 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
LIM2P55344 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC4.47□□□□□ -1.69
LIM2P55344 RNU6-618P-201ENST00000363518 112 ntBASIC4.47□□□□□ -1.69
LIM2P55344 NPM1P10-201ENST00000398310 865 ntBASIC4.47□□□□□ -1.69
LIM2P55344 AL591848.1-201ENST00000413092 322 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 81 ms