Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC5.55□□□□□ -1.52
NUP98P52948 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
NUP98P52948 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 RNA5SP307-201ENST00000362863 116 ntBASIC5.55□□□□□ -1.52
NUP98P52948 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.55□□□□□ -1.52
NUP98P52948 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.55□□□□□ -1.52
NUP98P52948 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC5.55□□□□□ -1.52
NUP98P52948 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC5.55□□□□□ -1.52
NUP98P52948 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC5.55□□□□□ -1.52
NUP98P52948 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.55□□□□□ -1.52
NUP98P52948 RNA5SP143-201ENST00000516936 115 ntBASIC5.55□□□□□ -1.52
NUP98P52948 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC5.55□□□□□ -1.52
NUP98P52948 FP325313.1-201ENST00000638228 703 ntBASIC5.55□□□□□ -1.52
NUP98P52948 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.55□□□□□ -1.52
NUP98P52948 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
NUP98P52948 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
NUP98P52948 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
NUP98P52948 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC5.54□□□□□ -1.52
NUP98P52948 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC5.54□□□□□ -1.52
NUP98P52948 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
NUP98P52948 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 AC009237.10-201ENST00000414112 510 ntBASIC5.54□□□□□ -1.52
NUP98P52948 EEF1A1P1-201ENST00000447052 739 ntBASIC5.54□□□□□ -1.52
NUP98P52948 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.54□□□□□ -1.52
NUP98P52948 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.54□□□□□ -1.52
NUP98P52948 RNA5SP249-201ENST00000516127 99 ntBASIC5.54□□□□□ -1.52
NUP98P52948 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.54□□□□□ -1.52
NUP98P52948 AC008833.1-201ENST00000611633 691 ntBASIC5.54□□□□□ -1.52
NUP98P52948 AC008013.2-202ENST00000637965 364 ntBASIC5.54□□□□□ -1.52
NUP98P52948 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
NUP98P52948 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
NUP98P52948 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.54□□□□□ -1.52
NUP98P52948 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
NUP98P52948 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.53□□□□□ -1.52
NUP98P52948 AL356276.2-201ENST00000435919 558 ntBASIC5.53□□□□□ -1.52
NUP98P52948 AC122718.1-201ENST00000439448 744 ntBASIC5.53□□□□□ -1.52
NUP98P52948 FAM133DP-201ENST00000464802 691 ntBASIC5.53□□□□□ -1.52
NUP98P52948 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC5.53□□□□□ -1.52
NUP98P52948 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.53□□□□□ -1.52
NUP98P52948 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NUP98P52948 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.53□□□□□ -1.52
NUP98P52948 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.53□□□□□ -1.52
NUP98P52948 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NUP98P52948 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC5.53□□□□□ -1.52
NUP98P52948 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
NUP98P52948 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.53□□□□□ -1.52
NUP98P52948 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NUP98P52948 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
NUP98P52948 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
NUP98P52948 AC105074.1-201ENST00000623380 3095 ntBASIC5.53□□□□□ -1.52
NUP98P52948 SPRR2C-201ENST00000290702 219 ntBASIC5.53□□□□□ -1.52
NUP98P52948 RNA5SP388-201ENST00000362584 119 ntBASIC5.53□□□□□ -1.52
NUP98P52948 RPL32P23-201ENST00000397237 405 ntBASIC5.53□□□□□ -1.52
NUP98P52948 RPL7P58-201ENST00000402913 758 ntBASIC5.53□□□□□ -1.52
NUP98P52948 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.53□□□□□ -1.52
NUP98P52948 AC062016.2-201ENST00000420950 676 ntBASIC5.53□□□□□ -1.52
NUP98P52948 RPS26P4-201ENST00000431743 355 ntBASIC5.53□□□□□ -1.52
NUP98P52948 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.53□□□□□ -1.52
NUP98P52948 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.53□□□□□ -1.52
NUP98P52948 AC025884.1-201ENST00000556034 378 ntBASIC5.53□□□□□ -1.52
NUP98P52948 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC5.53□□□□□ -1.52
NUP98P52948 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.53□□□□□ -1.52
NUP98P52948 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.53□□□□□ -1.52
NUP98P52948 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
NUP98P52948 ESRRG-208ENST00000391890 5542 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.52□□□□□ -1.53
NUP98P52948 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NUP98P52948 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 SNORA74C-2-201ENST00000411179 201 ntBASIC5.52□□□□□ -1.53
NUP98P52948 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC5.52□□□□□ -1.53
NUP98P52948 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 PSMB7P1-201ENST00000556349 514 ntBASIC5.52□□□□□ -1.53
NUP98P52948 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.52□□□□□ -1.53
NUP98P52948 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC5.52□□□□□ -1.53
NUP98P52948 RN7SL600P-201ENST00000581811 299 ntBASIC5.52□□□□□ -1.53
NUP98P52948 AL031658.2-201ENST00000616850 651 ntBASIC5.52□□□□□ -1.53
NUP98P52948 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC5.52□□□□□ -1.53
NUP98P52948 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
NUP98P52948 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.52□□□□□ -1.53
NUP98P52948 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
NUP98P52948 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
NUP98P52948 DYTN-201ENST00000452335 2051 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 83.7 ms