Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 IL6STP1-201ENST00000346911 1020 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 RNA5SP232-201ENST00000364144 119 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 MIR708-201ENST00000390708 88 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC4.47□□□□□ -1.69
HOXA1P49639 RNA5SP146-201ENST00000410743 123 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 LINC01347-201ENST00000417964 355 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXA1P49639 OR2X1P-201ENST00000421144 687 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC092648.1-201ENST00000425870 423 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 FO393419.3-201ENST00000428741 282 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AL359636.1-201ENST00000433572 522 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXA1P49639 GAPDHP48-201ENST00000436626 961 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC099063.2-201ENST00000446360 662 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 PTMAP3-201ENST00000447474 330 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 RPL5P30-201ENST00000465511 891 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC073610.1-201ENST00000489971 396 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC106822.1-201ENST00000502647 526 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC093534.1-201ENST00000504977 132 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 DUTP7-201ENST00000507982 486 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 EIF3KP3-201ENST00000514461 639 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 RN7SKP253-201ENST00000516424 309 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC021678.3-201ENST00000517893 476 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC116917.1-201ENST00000520558 305 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 NPM1P6-201ENST00000521088 871 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 CETN3-206ENST00000522864 738 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC079064.1-201ENST00000528365 362 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 AC027369.5-201ENST00000533838 755 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 AP002884.5-201ENST00000595053 1132 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 TEX41-218ENST00000596540 882 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXA1P49639 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXA1P49639 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC4.47□□□□□ -1.69
HOXA1P49639 RPL26P30-202ENST00000602923 645 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC4.47□□□□□ -1.69
HOXA1P49639 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC015914.2-201ENST00000618167 288 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 uc_338.7-201ENST00000621834 124 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AL390318.1-201ENST00000624564 687 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC4.47□□□□□ -1.69
HOXA1P49639 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.47□□□□□ -1.69
HOXA1P49639 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 AC091046.3-201ENST00000631455 1574 ntBASIC4.47□□□□□ -1.69
HOXA1P49639 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
HOXA1P49639 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.47□□□□□ -1.69
HOXA1P49639 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
HOXA1P49639 MFSD8-220ENST00000641243 1422 ntBASIC4.46□□□□□ -1.69
HOXA1P49639 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
HOXA1P49639 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.46□□□□□ -1.69
HOXA1P49639 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.46□□□□□ -1.7
HOXA1P49639 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 AC018529.3-201ENST00000624212 2254 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC4.46□□□□□ -1.7
HOXA1P49639 CASC19-281ENST00000642118 1554 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 KPNA2P2-201ENST00000419546 1489 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 ODF3-202ENST00000342593 386 ntTSL 5 BASIC4.46□□□□□ -1.7
HOXA1P49639 AL159987.1-201ENST00000347911 293 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HOXA1P49639 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.46□□□□□ -1.7
HOXA1P49639 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
HOXA1P49639 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
HOXA1P49639 SNORA48.4-201ENST00000391089 134 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
HOXA1P49639 AL009179.1-201ENST00000406085 265 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 HSD17B7P1-201ENST00000412419 1017 ntBASIC4.46□□□□□ -1.7
HOXA1P49639 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC4.46□□□□□ -1.7
HOXA1P49639 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 70.3 ms