Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC013283.1-201ENST00000557282 492 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC6.67□□□□□ -1.34
MSX1P28360 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC6.67□□□□□ -1.34
MSX1P28360 AC090525.3-201ENST00000605601 189 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AL627309.6-201ENST00000606857 840 ntBASIC6.67□□□□□ -1.34
MSX1P28360 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC6.67□□□□□ -1.34
MSX1P28360 AC091925.1-201ENST00000623204 462 ntBASIC6.67□□□□□ -1.34
MSX1P28360 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.67□□□□□ -1.34
MSX1P28360 PSMD5-AS1-213ENST00000640327 3531 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 RBM11-201ENST00000400577 1934 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 TRIM6-201ENST00000278302 3217 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 ACTR3BP2-202ENST00000623630 1338 ntBASIC6.67□□□□□ -1.34
MSX1P28360 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 AC097478.1-207ENST00000612706 2422 ntTSL 5 BASIC6.67□□□□□ -1.34
MSX1P28360 AC090643.1-201ENST00000623600 3100 ntBASIC6.67□□□□□ -1.34
MSX1P28360 MAPK10-270ENST00000641102 3538 ntBASIC6.67□□□□□ -1.34
MSX1P28360 CHD2-208ENST00000626874 7764 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 NPIPB9-202ENST00000550983 2123 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 ERCC6-202ENST00000374127 1782 ntBASIC6.67□□□□□ -1.34
MSX1P28360 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 ACTG2-203ENST00000409731 1413 ntTSL 2 BASIC6.67□□□□□ -1.34
MSX1P28360 PSG9-206ENST00000593948 1429 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 CFI-201ENST00000394634 2159 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
MSX1P28360 KLHL8-203ENST00000498875 5175 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 AC011008.2-201ENST00000624866 3352 ntBASIC6.66□□□□□ -1.34
MSX1P28360 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 GAPVD1-202ENST00000297933 6003 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 TMEM72-AS1-201ENST00000450287 3300 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 ARHGAP42P4-201ENST00000549782 2934 ntBASIC6.66□□□□□ -1.34
MSX1P28360 U3.14-201ENST00000365363 227 ntBASIC6.66□□□□□ -1.34
MSX1P28360 HYKK-202ENST00000408962 847 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 RPS21P8-201ENST00000413365 247 ntBASIC6.66□□□□□ -1.34
MSX1P28360 NDUFB4P5-201ENST00000415445 361 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC083864.2-201ENST00000446024 482 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC067817.2-201ENST00000459965 387 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 WBP1LP1-201ENST00000460451 896 ntBASIC6.66□□□□□ -1.34
MSX1P28360 RPL34P34-201ENST00000465389 354 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC026336.1-201ENST00000466577 351 ntBASIC6.66□□□□□ -1.34
MSX1P28360 RN7SL392P-201ENST00000473024 299 ntBASIC6.66□□□□□ -1.34
MSX1P28360 RPL21P42-201ENST00000488408 464 ntBASIC6.66□□□□□ -1.34
MSX1P28360 RPL38P4-201ENST00000502376 214 ntBASIC6.66□□□□□ -1.34
MSX1P28360 OR7E163P-201ENST00000505943 894 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC027801.3-201ENST00000515049 698 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC6.66□□□□□ -1.34
MSX1P28360 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC022861.1-201ENST00000522981 663 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 GTF2IP11-201ENST00000526931 420 ntBASIC6.66□□□□□ -1.34
MSX1P28360 LINC01479-201ENST00000545520 509 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
MSX1P28360 AC023908.2-201ENST00000558616 318 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC099489.2-201ENST00000574976 260 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC103808.6-201ENST00000578035 464 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AP005202.2-201ENST00000582386 658 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 AC087763.1-201ENST00000603391 286 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AP005328.2-201ENST00000606879 657 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 RN7SL778P-201ENST00000607160 297 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC019193.3-201ENST00000609144 554 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AP001521.1-201ENST00000609150 300 ntBASIC6.66□□□□□ -1.34
MSX1P28360 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 uc_338.37-201ENST00000620113 186 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC005899.6-201ENST00000620729 297 ntBASIC6.66□□□□□ -1.34
MSX1P28360 GLUD1P2-202ENST00000630097 606 ntTSL 3 BASIC6.66□□□□□ -1.34
MSX1P28360 AC006453.3-201ENST00000635891 377 ntBASIC6.66□□□□□ -1.34
MSX1P28360 AC123769.2-201ENST00000624332 5984 ntBASIC6.66□□□□□ -1.34
MSX1P28360 PDZK1P1-201ENST00000401008 3498 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 LINC02532-207ENST00000436659 1387 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 AL354854.1-201ENST00000455940 1363 ntBASIC6.66□□□□□ -1.34
MSX1P28360 JAML-206ENST00000526620 1383 ntAPPRIS ALT2 TSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 NME8-201ENST00000199447 2312 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 BBOX1-201ENST00000263182 1886 ntAPPRIS P1 TSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 CTNNA1-201ENST00000302763 3756 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 CSDE1-218ENST00000610726 4312 ntTSL 5 BASIC6.66□□□□□ -1.34
MSX1P28360 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 PPFIA2-205ENST00000541570 2976 ntTSL 2 BASIC6.66□□□□□ -1.34
MSX1P28360 SYCP1-202ENST00000369522 3522 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
MSX1P28360 MT-CO1-201ENST00000361624 1542 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
MSX1P28360 MTCO1P12-201ENST00000414273 1543 ntBASIC6.66□□□□□ -1.34
MSX1P28360 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms