Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 RPL7P41-201ENST00000485823 957 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC140172.1-201ENST00000502928 141 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXD4P09016 ATG10-AS1-201ENST00000504846 648 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC010425.1-201ENST00000511734 554 ntTSL 4 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.59□□□□□ -1.67
HOXD4P09016 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.59□□□□□ -1.67
HOXD4P09016 SDAD1P1-202ENST00000524156 2051 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AP000859.1-201ENST00000525536 307 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
HOXD4P09016 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.59□□□□□ -1.67
HOXD4P09016 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC4.59□□□□□ -1.67
HOXD4P09016 AC012557.1-201ENST00000607115 611 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AP001521.2-201ENST00000608772 546 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 AL158062.1-201ENST00000619632 745 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AL391262.2-201ENST00000622466 494 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 AC079298.2-201ENST00000623885 459 ntBASIC4.59□□□□□ -1.67
HOXD4P09016 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC4.59□□□□□ -1.67
HOXD4P09016 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.68
HOXD4P09016 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.68
HOXD4P09016 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 AC104118.1-201ENST00000607625 1589 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
HOXD4P09016 RNU6-386P-201ENST00000362650 107 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 RNA5SP455-201ENST00000365190 119 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 SNORA66-201ENST00000384792 133 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AL021331.1-201ENST00000402817 582 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXD4P09016 RPL7AP49-201ENST00000429522 581 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AC009238.2-201ENST00000431026 355 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 AL591438.1-201ENST00000433508 581 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AC008072.1-201ENST00000434254 824 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AC090804.1-201ENST00000448870 490 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 RN7SL443P-201ENST00000464331 290 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXD4P09016 IGKV1-32-201ENST00000519290 311 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 MTND1P36-201ENST00000522384 936 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 OR8K2P-201ENST00000524645 927 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.58□□□□□ -1.68
HOXD4P09016 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC4.58□□□□□ -1.68
HOXD4P09016 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC4.58□□□□□ -1.68
HOXD4P09016 AC006349.1-201ENST00000555526 235 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXD4P09016 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 BGLT3-201ENST00000564523 994 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.58□□□□□ -1.68
HOXD4P09016 AC234771.5-201ENST00000600161 514 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 AC087385.3-201ENST00000620477 187 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 MIR7641-1-201ENST00000627518 61 ntBASIC4.58□□□□□ -1.68
HOXD4P09016 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
HOXD4P09016 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
HOXD4P09016 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
HOXD4P09016 AC024341.1-201ENST00000526444 1552 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXD4P09016 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXD4P09016 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXD4P09016 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXD4P09016 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
HOXD4P09016 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXD4P09016 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
HOXD4P09016 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXD4P09016 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXD4P09016 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.57□□□□□ -1.68
HOXD4P09016 RNU1-94P-201ENST00000362627 173 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 OR6K3-202ENST00000368146 996 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXD4P09016 OR13C3-201ENST00000374781 1108 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
HOXD4P09016 RNU6-729P-201ENST00000384399 107 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 MIR589-201ENST00000385238 99 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXD4P09016 OR2AM1P-201ENST00000422137 422 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 AL390879.2-203ENST00000426943 1121 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 AL590623.1-201ENST00000427864 105 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.57□□□□□ -1.68
HOXD4P09016 MTND4P15-201ENST00000437913 1033 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 AP000949.1-201ENST00000438328 629 ntBASIC4.57□□□□□ -1.68
HOXD4P09016 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms