Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
TRIM39Q9HCM9 AC092724.1-201ENST00000624623 3397 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC016745.2-201ENST00000608834 3443 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 RN7SKP151-201ENST00000410230 316 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 RNA5SP251-201ENST00000410614 137 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AL445213.1-201ENST00000412589 747 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 OFD1P2Y-201ENST00000421895 1149 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 ANKRD30BP3-201ENST00000444850 1070 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 SNRPCP3-201ENST00000474888 476 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC114728.1-201ENST00000488289 483 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 CBX1-205ENST00000495350 550 ntTSL 2 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 SETP14-201ENST00000497538 873 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC048346.1-201ENST00000510247 144 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 RN7SKP283-201ENST00000517197 270 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 NAT2-202ENST00000520116 716 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC008562.1-201ENST00000521763 330 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AP001189.2-201ENST00000527320 189 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC005363.1-201ENST00000530779 351 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 RPA2P1-201ENST00000556557 721 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC133552.5-201ENST00000604266 540 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC013562.2-201ENST00000611632 603 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AL133243.1-201ENST00000614487 366 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC245014.3-201ENST00000618589 347 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC008627.1-201ENST00000517511 1704 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 CR381670.1-201ENST00000624291 1693 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 ASNSP1-204ENST00000641977 1664 ntBASIC6.01□□□□□ -1.45
TRIM39Q9HCM9 AC011477.1-204ENST00000623416 1325 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC6□□□□□ -1.45
TRIM39Q9HCM9 AC140134.1-201ENST00000511830 3544 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
TRIM39Q9HCM9 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 RAB30-214ENST00000534141 3746 ntTSL 1 (best) BASIC6□□□□□ -1.45
TRIM39Q9HCM9 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6□□□□□ -1.45
TRIM39Q9HCM9 SMG1P7-201ENST00000565246 2704 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 GPN1-205ENST00000458167 1618 ntTSL 2 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 AC119744.1-201ENST00000454746 1715 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 RNU6-1066P-201ENST00000363573 105 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 RN7SKP275-201ENST00000364626 301 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 RNU6-621P-201ENST00000364752 109 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 LCN1P2-201ENST00000372030 223 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 MIR217-201ENST00000384817 110 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 NUDT19P3-201ENST00000404698 555 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6□□□□□ -1.45
TRIM39Q9HCM9 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 GAS5-202ENST00000414075 413 ntTSL 2 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 DNAJA1P2-201ENST00000421360 1197 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 AL160272.1-201ENST00000421509 521 ntTSL 3 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 Z93242.1-201ENST00000427102 353 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 AC115283.1-201ENST00000427353 400 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 MTCO3P21-201ENST00000430791 643 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 ARL6IP1P2-201ENST00000431356 563 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC6□□□□□ -1.45
TRIM39Q9HCM9 NPM1P33-201ENST00000438918 872 ntBASIC6□□□□□ -1.45
TRIM39Q9HCM9 AL138899.2-201ENST00000439139 499 ntBASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms