Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC110768.1-201ENST00000509222 400 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AL596275.2-208ENST00000641192 594 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 ARNTL2-207ENST00000542388 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 ITPR1-204ENST00000443694 9513 ntAPPRIS ALT1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 RPS20P21-201ENST00000466859 343 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 HSPD1P15-201ENST00000505573 1122 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC097486.1-201ENST00000515331 210 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 KIAA0100-203ENST00000544884 6856 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 CCDC80-201ENST00000206423 12430 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 NPM1P26-201ENST00000426339 738 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 COX6B1P7-201ENST00000430845 235 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 GAPDHP14-201ENST00000450472 937 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC104849.1-201ENST00000462623 405 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC136777.2-201ENST00000522979 358 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 AC116312.1-201ENST00000606841 314 ntBASIC4.35□□□□□ -1.71
VPS13AQ96RL7 PCNP-208ENST00000627393 136 ntTSL 2 BASIC4.35□□□□□ -1.71
VPS13AQ96RL7 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 AC090142.1-201ENST00000465776 462 ntBASIC4.34□□□□□ -1.71
VPS13AQ96RL7 AC099805.1-203ENST00000518177 773 ntTSL 2 BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 OR8Q1P-201ENST00000526467 655 ntBASIC4.34□□□□□ -1.71
VPS13AQ96RL7 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 AL137843.1-201ENST00000605078 385 ntBASIC4.34□□□□□ -1.71
VPS13AQ96RL7 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
VPS13AQ96RL7 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 AP000580.1-201ENST00000404439 358 ntBASIC4.34□□□□□ -1.72
VPS13AQ96RL7 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 RN7SKP157-201ENST00000516174 282 ntBASIC4.34□□□□□ -1.72
VPS13AQ96RL7 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
VPS13AQ96RL7 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AC140134.1-201ENST00000511830 3544 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 MRO-201ENST00000256425 5166 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AL035696.2-201ENST00000407941 709 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 SNRPFP1-201ENST00000414761 252 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 COX6CP13-201ENST00000428703 226 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 NPM1P34-201ENST00000428821 893 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AC074250.1-201ENST00000511117 192 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AL049830.4-201ENST00000555149 351 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 AL159169.3-201ENST00000608871 561 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 CPHL1P-201ENST00000461341 3407 ntBASIC4.33□□□□□ -1.72
VPS13AQ96RL7 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.33□□□□□ -1.72
VPS13AQ96RL7 ANAPC1P1-201ENST00000426186 2145 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms