Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.93□□□□□ -1.62
COL4A4P53420 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL4A4P53420 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL4A4P53420 RNA5SP366-201ENST00000365454 123 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AL607077.1-201ENST00000401718 499 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 EIF4A1P3-201ENST00000411521 244 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.92□□□□□ -1.62
COL4A4P53420 NFYAP1-201ENST00000431953 972 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 MIR2116-201ENST00000517221 80 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC4.92□□□□□ -1.62
COL4A4P53420 AC084783.1-201ENST00000565846 910 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AP001160.4-201ENST00000596971 382 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 IMMP1LP1-201ENST00000605170 488 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
COL4A4P53420 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 AC025031.4-201ENST00000621248 3271 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC4.92□□□□□ -1.62
COL4A4P53420 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
COL4A4P53420 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 AL583835.1-201ENST00000399570 407 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A4P53420 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC4.92□□□□□ -1.62
COL4A4P53420 VN1R34P-201ENST00000447387 883 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.92□□□□□ -1.62
COL4A4P53420 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A4P53420 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.92□□□□□ -1.62
COL4A4P53420 MIR3158-1-201ENST00000583596 81 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AC017104.4-201ENST00000636283 1592 ntBASIC4.92□□□□□ -1.62
COL4A4P53420 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC4.92□□□□□ -1.62
COL4A4P53420 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL4A4P53420 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.92□□□□□ -1.62
COL4A4P53420 CSMD2-206ENST00000373388 13118 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL4A4P53420 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.91□□□□□ -1.62
COL4A4P53420 AL591135.1-201ENST00000401578 5914 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL4A4P53420 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
COL4A4P53420 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL4A4P53420 MIR372-201ENST00000362225 67 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL4A4P53420 AL590762.2-201ENST00000395798 571 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 SNORA11.1-201ENST00000408133 129 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 NDUFA5P1-201ENST00000433858 341 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.91□□□□□ -1.62
COL4A4P53420 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC4.91□□□□□ -1.62
COL4A4P53420 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.91□□□□□ -1.62
COL4A4P53420 RN7SL132P-201ENST00000478131 296 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC4.91□□□□□ -1.62
COL4A4P53420 RN7SL810P-201ENST00000493031 276 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.91□□□□□ -1.62
COL4A4P53420 RGS5-218ENST00000526176 574 ntTSL 4 BASIC4.91□□□□□ -1.62
COL4A4P53420 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.91□□□□□ -1.62
COL4A4P53420 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC4.91□□□□□ -1.62
COL4A4P53420 AC090515.3-201ENST00000560431 315 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.91□□□□□ -1.62
COL4A4P53420 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL4A4P53420 AC090506.2-201ENST00000624521 419 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL4A4P53420 AL079305.1-201ENST00000623159 3008 ntBASIC4.91□□□□□ -1.62
COL4A4P53420 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL4A4P53420 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 AL731532.2-201ENST00000623542 1953 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 DCC-203ENST00000442544 10206 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL4A4P53420 ICE2P1-201ENST00000512800 1849 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 AL161912.2-201ENST00000565707 3007 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 RNA5SP283-201ENST00000365604 119 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 AL358232.1-201ENST00000448030 501 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 RN7SL303P-201ENST00000469773 251 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 AC090686.1-201ENST00000481577 749 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 AC069304.1-201ENST00000491593 704 ntBASIC4.9□□□□□ -1.62
COL4A4P53420 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC4.9□□□□□ -1.62
COL4A4P53420 AC010476.1-201ENST00000519111 851 ntBASIC4.9□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms