Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.57□□□□□ -1.52
BRCA1P38398 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.57□□□□□ -1.52
BRCA1P38398 AC108467.2-201ENST00000617640 1597 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC5.57□□□□□ -1.52
BRCA1P38398 ST7-221ENST00000465133 2155 ntTSL 5 BASIC5.56□□□□□ -1.52
BRCA1P38398 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC5.56□□□□□ -1.52
BRCA1P38398 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 RNA5SP119-201ENST00000362715 117 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.56□□□□□ -1.52
BRCA1P38398 NPM1P26-201ENST00000426339 738 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AC138761.5-201ENST00000433967 325 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AC007389.2-201ENST00000434630 306 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 VN1R105P-201ENST00000486595 910 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.56□□□□□ -1.52
BRCA1P38398 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC5.56□□□□□ -1.52
BRCA1P38398 AC040958.1-201ENST00000561102 201 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AGGF1P9-201ENST00000561884 913 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 AC073137.1-201ENST00000605636 634 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AC069200.1-201ENST00000609511 323 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AC016590.3-201ENST00000611171 753 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC5.56□□□□□ -1.52
BRCA1P38398 MTND5P12-201ENST00000502851 1449 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 AC004817.4-201ENST00000602396 3625 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.56□□□□□ -1.52
BRCA1P38398 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
BRCA1P38398 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
BRCA1P38398 AL139095.3-201ENST00000419672 1203 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AL354766.1-201ENST00000423396 542 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.56□□□□□ -1.52
BRCA1P38398 AL691449.1-201ENST00000426570 421 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 RPL5P2-201ENST00000429598 854 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
BRCA1P38398 AC073284.1-201ENST00000448086 404 ntTSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 RPS27AP13-201ENST00000498403 237 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.56□□□□□ -1.52
BRCA1P38398 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.56□□□□□ -1.52
BRCA1P38398 Z95327.3-201ENST00000610385 572 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AL031658.2-201ENST00000616850 651 ntBASIC5.56□□□□□ -1.52
BRCA1P38398 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC5.56□□□□□ -1.52
BRCA1P38398 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 AL079305.1-201ENST00000623159 3008 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
BRCA1P38398 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
BRCA1P38398 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
BRCA1P38398 MT-RNR1-201ENST00000389680 954 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
BRCA1P38398 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC5.55□□□□□ -1.52
BRCA1P38398 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.55□□□□□ -1.52
BRCA1P38398 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.55□□□□□ -1.52
BRCA1P38398 RPL5P12-201ENST00000477071 851 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 AC146944.2-203ENST00000502493 354 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.55□□□□□ -1.52
BRCA1P38398 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.55□□□□□ -1.52
BRCA1P38398 AC139495.1-202ENST00000513164 354 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 MTND4LP31-201ENST00000514859 294 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC5.55□□□□□ -1.52
BRCA1P38398 MTRNR2L13-201ENST00000604093 1445 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
BRCA1P38398 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.55□□□□□ -1.52
BRCA1P38398 uc_338.13-201ENST00000618243 179 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC5.55□□□□□ -1.52
BRCA1P38398 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
BRCA1P38398 AC006065.6-201ENST00000625201 545 ntBASIC5.55□□□□□ -1.52
BRCA1P38398 CCDC186-203ENST00000369287 7245 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.55□□□□□ -1.52
BRCA1P38398 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.55□□□□□ -1.52
BRCA1P38398 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
BRCA1P38398 AC104260.2-201ENST00000623551 3497 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 CDY3P-201ENST00000454543 1618 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
BRCA1P38398 RNU1-132P-201ENST00000364300 164 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.54□□□□□ -1.52
BRCA1P38398 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.54□□□□□ -1.52
BRCA1P38398 YME1L1P1-201ENST00000429435 297 ntBASIC5.54□□□□□ -1.52
BRCA1P38398 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC5.54□□□□□ -1.52
BRCA1P38398 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms