Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.54□□□□□ -1.52
SCN4AP35499 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 AC091959.2-201ENST00000477363 321 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 RN7SL558P-201ENST00000497468 299 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 PSMB7P1-201ENST00000556349 514 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 AC090515.3-201ENST00000560431 315 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 AC040958.1-201ENST00000561102 201 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 AC093249.4-201ENST00000564755 259 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 AC017100.2-201ENST00000584628 355 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 PRPF19P1-201ENST00000584766 898 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 AC010487.1-201ENST00000594408 1172 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 IPO5P1-202ENST00000600039 287 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.54□□□□□ -1.52
SCN4AP35499 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.54□□□□□ -1.52
SCN4AP35499 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
SCN4AP35499 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
SCN4AP35499 AP005432.1-201ENST00000580891 3485 ntBASIC5.54□□□□□ -1.52
SCN4AP35499 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
SCN4AP35499 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC008033.1-201ENST00000216407 1162 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 AC021146.4-201ENST00000309229 279 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
SCN4AP35499 SDHCP2-201ENST00000398565 501 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AC008280.1-201ENST00000418851 412 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 PRSS3P4-201ENST00000453323 162 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 RPS7P7-201ENST00000463499 571 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 AP000827.1-201ENST00000527814 258 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.53□□□□□ -1.52
SCN4AP35499 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 OR51H2P-202ENST00000641424 3046 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AL627171.1-201ENST00000618845 1308 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 TCP11X1-202ENST00000622971 1372 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.53□□□□□ -1.52
SCN4AP35499 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
SCN4AP35499 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.53□□□□□ -1.52
SCN4AP35499 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 AC106871.1-201ENST00000568324 3102 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 MIR372-201ENST00000362225 67 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 RNU6-525P-201ENST00000363685 104 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 NFYAP1-201ENST00000431953 972 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC026782.2-201ENST00000510845 636 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AC006499.6-201ENST00000511169 607 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC010547.7-201ENST00000570323 333 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.53□□□□□ -1.52
SCN4AP35499 AC024220.1-201ENST00000603675 484 ntBASIC5.53□□□□□ -1.52
SCN4AP35499 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
SCN4AP35499 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.52□□□□□ -1.53
SCN4AP35499 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
SCN4AP35499 RPL21P65-201ENST00000406094 466 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 OR8G2P-201ENST00000412796 908 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC5.52□□□□□ -1.53
SCN4AP35499 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 H2AFZP5-201ENST00000446960 382 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 OR52E3P-201ENST00000452083 936 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 Y_RNA.719-201ENST00000517156 106 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.52□□□□□ -1.53
SCN4AP35499 AC010476.1-201ENST00000519111 851 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.52□□□□□ -1.53
SCN4AP35499 RN7SL290P-201ENST00000578661 300 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.52□□□□□ -1.53
SCN4AP35499 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.52□□□□□ -1.53
SCN4AP35499 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC5.52□□□□□ -1.53
SCN4AP35499 AC138965.3-201ENST00000623875 498 ntBASIC5.52□□□□□ -1.53
SCN4AP35499 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
SCN4AP35499 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
SCN4AP35499 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SCN4AP35499 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
SCN4AP35499 MDN1-205ENST00000629399 17400 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
SCN4AP35499 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
SCN4AP35499 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
SCN4AP35499 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
SCN4AP35499 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms