Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SL55P-201ENST00000464534 297 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 RPS15AP17-201ENST00000470598 390 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 SYNPR-208ENST00000472899 527 ntTSL 4 BASIC7.73□□□□□ -1.17
COL9A1P20849 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC7.73□□□□□ -1.17
COL9A1P20849 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 RNU4ATAC7P-201ENST00000516280 125 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 MYL12AP1-201ENST00000518490 515 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 MAL2-208ENST00000523307 556 ntTSL 4 BASIC7.73□□□□□ -1.17
COL9A1P20849 RGS5-220ENST00000528689 566 ntTSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 PMS2P3-207ENST00000529061 717 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 SERPINA15P-201ENST00000529287 266 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AC073525.1-202ENST00000550049 732 ntTSL 3 BASIC7.73□□□□□ -1.17
COL9A1P20849 LINC01989-201ENST00000566930 1081 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 AL356432.3-201ENST00000568952 465 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AC002115.1-201ENST00000589603 568 ntTSL 4 BASIC7.73□□□□□ -1.17
COL9A1P20849 BNIP3P25-201ENST00000596023 559 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 Metazoa_SRP.199-201ENST00000615501 281 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 AC243585.2-201ENST00000619099 508 ntTSL 3 BASIC7.73□□□□□ -1.17
COL9A1P20849 LINC01232-205ENST00000630421 1002 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 ANKRD27-201ENST00000306065 4450 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 ZNF512-201ENST00000355467 3541 ntAPPRIS P2 TSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 AC121333.1-201ENST00000567488 2709 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 GALNT11-201ENST00000415421 2555 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 NUGGC-201ENST00000413272 3887 ntAPPRIS P1 TSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 CPA4-201ENST00000222482 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 ABCB4-203ENST00000359206 3923 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 DGKB-205ENST00000406247 3257 ntTSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC7.73□□□□□ -1.17
COL9A1P20849 AC092125.1-201ENST00000562568 1995 ntBASIC7.73□□□□□ -1.17
COL9A1P20849 PRDM11-206ENST00000622142 10730 ntAPPRIS ALT2 TSL 5 BASIC7.73□□□□□ -1.17
COL9A1P20849 ZNF343-208ENST00000617391 3300 ntTSL 4 BASIC7.73□□□□□ -1.17
COL9A1P20849 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC7.73□□□□□ -1.17
COL9A1P20849 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 AL450423.1-201ENST00000615176 1857 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 TRPM3-204ENST00000360823 5966 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 NFRKB-202ENST00000524746 4114 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 HPS5-201ENST00000349215 4491 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 FAM13A-201ENST00000264344 5858 ntAPPRIS P2 TSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 PTBP3-203ENST00000343327 2755 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 KIF1B-201ENST00000263934 6816 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 CTNND1-201ENST00000358694 6135 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 PDE7A-202ENST00000396642 2986 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 TREML2-201ENST00000483722 3302 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 CDK15-202ENST00000410091 1780 ntAPPRIS P3 TSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 ZSCAN32-201ENST00000304926 3027 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 AL109811.1-201ENST00000452378 2682 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 PBRM1-206ENST00000409114 5015 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 AC024132.1-201ENST00000382007 2509 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 GANC-206ENST00000566442 2512 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 DNAJC5G-203ENST00000404433 1647 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 HLTF-208ENST00000494055 3633 ntAPPRIS P3 TSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 OR5A1-201ENST00000302030 1051 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL9A1P20849 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
COL9A1P20849 RNU6-552P-201ENST00000362869 119 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 RNU1-115P-201ENST00000365329 160 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 RN7SKP69-201ENST00000365390 305 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 Y_RNA.380-201ENST00000365663 111 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 RNU6-890P-201ENST00000384121 107 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 RNU6-1151P-201ENST00000384684 107 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 RNU6-903P-201ENST00000391270 109 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 GCNT1P4-201ENST00000404096 329 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 RN7SKP216-201ENST00000411050 312 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 GSTA10P-201ENST00000412182 576 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 OR6C66P-201ENST00000414917 930 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 RSL24D1P6-201ENST00000426934 401 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 HMGB1P9-201ENST00000429856 646 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AL590682.1-201ENST00000437248 344 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 MED28P3-201ENST00000444288 531 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 RN7SL152P-201ENST00000484176 298 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 Y_RNA.680-201ENST00000516441 93 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AC012400.1-201ENST00000518452 381 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AP006245.2-201ENST00000522004 300 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 NUDT7-206ENST00000568787 678 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 AC015818.6-201ENST00000584274 634 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AC105224.1-201ENST00000587055 421 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 AC008655.2-201ENST00000597049 304 ntTSL 4 BASIC7.72□□□□□ -1.17
COL9A1P20849 AC015967.1-201ENST00000619893 476 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 ERBB3-203ENST00000415288 4353 ntTSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 AC090198.1-201ENST00000518639 2355 ntTSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 PIGN-221ENST00000638183 4046 ntTSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 AP4S1-211ENST00000616371 4595 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
COL9A1P20849 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
COL9A1P20849 GTF2IP1-202ENST00000614592 2047 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 THUMPD3P1-201ENST00000506556 1480 ntBASIC7.72□□□□□ -1.17
COL9A1P20849 SMARCA1-203ENST00000371123 3948 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
COL9A1P20849 TRPC5-201ENST00000262839 5839 ntAPPRIS P1 TSL 1 (best) BASIC7.72□□□□□ -1.17
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms