Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 IL18R1-202ENST00000334376 537 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RNA5SP71-201ENST00000362967 126 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RNU6-593P-201ENST00000364716 112 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 TRBV6-6-201ENST00000390371 388 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 SNORA75.6-201ENST00000391318 127 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RPL21P1-201ENST00000399532 476 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 PRELID1P2-201ENST00000407805 396 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AP000275.1-201ENST00000411943 390 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AL451048.1-201ENST00000413328 217 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 SUMO2P8-201ENST00000434672 286 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AL954705.1-201ENST00000435277 559 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 IGKV1OR-3-201ENST00000446944 348 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RPL5P22-201ENST00000480199 884 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 SMR3B-202ENST00000504825 489 ntAPPRIS P1 TSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SKP14-201ENST00000516000 329 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 HMGB1P23-201ENST00000518743 568 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 MTND6P19-201ENST00000519399 524 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 IGKV2OR22-4-201ENST00000523309 367 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC087280.1-201ENST00000530632 1003 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AP001804.2-201ENST00000533932 910 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC084816.1-211ENST00000540994 485 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 THAP2-202ENST00000547843 672 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC144548.1-201ENST00000549577 324 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 SETP7-201ENST00000552169 453 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 IGHV1OR15-4-201ENST00000560037 348 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC034105.2-201ENST00000561866 238 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 RN7SL123P-201ENST00000577239 292 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC138761.3-201ENST00000579993 334 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 MIR3187-201ENST00000583431 70 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF559-205ENST00000586255 1016 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC092447.9-201ENST00000603395 144 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AL031176.1-201ENST00000604554 466 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 PROX1-AS1-221ENST00000615085 673 ntTSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 PISRT1.1-201ENST00000616930 107 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC025162.2-201ENST00000619602 560 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 AC134981.1-201ENST00000628076 348 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 TNFSF15-201ENST00000374044 2789 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 B4GALT4-207ENST00000467604 5794 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 IL18RAP-202ENST00000409369 1890 ntTSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 EVI2A-203ENST00000462804 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 APP-209ENST00000440126 2846 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 KCNMA1-266ENST00000639601 11920 ntAPPRIS ALT2 TSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 GUCY2GP-201ENST00000479705 3222 ntBASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 ZNF43-201ENST00000354959 2881 ntAPPRIS P3 TSL 1 (best) BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC7.72□□□□□ -1.17
VPS9D1Q9Y2B5 SLFN13-209ENST00000533791 4121 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 AL133320.1-201ENST00000621423 2352 ntBASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 EPHA4-203ENST00000409938 3363 ntAPPRIS P1 TSL 2 BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 CORIN-207ENST00000505909 3018 ntTSL 5 BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 KLHL2-209ENST00000514860 2442 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 TMEM108-201ENST00000321871 3744 ntAPPRIS P3 TSL 1 (best) BASIC7.71□□□□□ -1.17
VPS9D1Q9Y2B5 CCDC63-204ENST00000552694 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 TTC23-202ENST00000394129 2505 ntAPPRIS ALT2 TSL 2 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 SLC22A9-201ENST00000279178 2343 ntAPPRIS P1 TSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC135012.3-201ENST00000599841 4039 ntTSL 4 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 SNORD3E-201ENST00000362899 217 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 CBWD1-207ENST00000382447 1241 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 SNORA10-201ENST00000384084 133 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 Y_RNA.506-201ENST00000384494 102 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AL391419.1-201ENST00000398901 1275 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC048351.1-201ENST00000420064 602 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 PDSS1P1-201ENST00000422953 1114 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 LINC00460-201ENST00000435024 631 ntTSL 1 (best) BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 RPS10P3-201ENST00000439253 494 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 OR13K1P-201ENST00000444577 975 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AL161454.1-201ENST00000446226 569 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AL162427.1-201ENST00000450399 439 ntTSL 5 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AL021154.1-201ENST00000451217 456 ntTSL 3 BASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC092647.2-201ENST00000452998 253 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC008026.1-201ENST00000460492 447 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 AC104849.1-201ENST00000462623 405 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 RN7SL241P-201ENST00000482973 236 ntBASIC7.71□□□□□ -1.18
VPS9D1Q9Y2B5 Z99943.2-201ENST00000507585 266 ntBASIC7.71□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 71.6 ms