Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 CFAP70-202ENST00000340329 1403 ntTSL 5 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.92□□□□□ -1.3
CCDC39Q9UFE4 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC140479.2-201ENST00000421567 3130 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC024587.1-201ENST00000505925 2157 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AP002004.1-203ENST00000531091 1768 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 LYZL1-201ENST00000375500 815 ntAPPRIS P1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 RN7SKP146-201ENST00000410242 334 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 RN7SKP33-201ENST00000410942 340 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 LINC01423-201ENST00000414189 608 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 FNDC3CP-201ENST00000420795 1155 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 Z95152.1-201ENST00000453556 656 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AL109741.2-201ENST00000455561 343 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC008410.1-201ENST00000483777 339 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 PDCL3P4-201ENST00000489621 720 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC021006.1-201ENST00000489849 553 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 RPS27P20-201ENST00000492051 246 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AL024509.2-201ENST00000493462 493 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 RN7SL612P-201ENST00000497704 295 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC096751.1-202ENST00000502691 1067 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 MTND2P33-201ENST00000506452 1031 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 FABP5P6-201ENST00000510588 409 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 MIR5010-201ENST00000582846 120 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC119501.1-201ENST00000603646 475 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AP000907.4-201ENST00000604143 237 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 WBP1LP12-201ENST00000604449 331 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 RN7SL261P-201ENST00000613441 282 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 ICE2P1-201ENST00000512800 1849 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 CUL4AP1-201ENST00000514750 1863 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC073429.2-201ENST00000569694 1444 ntBASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 IFNE-201ENST00000448696 1475 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 OR4N5-202ENST00000641086 2187 ntAPPRIS P1 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.91□□□□□ -1.3
CCDC39Q9UFE4 ALB-202ENST00000401494 1659 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 RNY4P24-201ENST00000362735 96 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 RNU6-181P-201ENST00000363225 107 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 U3.4-201ENST00000363352 213 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 RN7SKP128-201ENST00000364270 303 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 RNU6-796P-201ENST00000391086 107 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 Z86062.1-201ENST00000406773 777 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 METTL15P3-201ENST00000415522 1221 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 AC096644.3-201ENST00000416788 338 ntBASIC6.9□□□□□ -1.3
CCDC39Q9UFE4 MRPS36P1-201ENST00000421291 307 ntBASIC6.9□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms