Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RN7SKP148-201ENST00000410179 275 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RN7SKP161-201ENST00000411110 305 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 LINC00362-201ENST00000414345 264 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RPS3AP9-201ENST00000417027 792 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 USP9YP27-201ENST00000418455 438 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 LINC02526-201ENST00000424162 419 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 USP12PX-201ENST00000432383 1057 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 FAM103A2P-201ENST00000444122 354 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AL136126.1-201ENST00000473603 402 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AP001025.2-201ENST00000490908 477 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC005726.1-201ENST00000494679 427 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RPL30P11-201ENST00000495304 339 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 RPSAP51-201ENST00000497462 645 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC008628.2-201ENST00000502605 298 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 NPM1P27-201ENST00000502784 830 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC091185.1-201ENST00000523840 528 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC090193.1-202ENST00000524355 566 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 MTND1P35-201ENST00000526739 508 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 CBX3P7-201ENST00000532876 502 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC011611.6-201ENST00000547483 255 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AL512360.1-201ENST00000555346 234 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 MED31-202ENST00000574128 619 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 NF1P5-201ENST00000588287 448 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AC123786.2-201ENST00000603459 275 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC140Q96MF4 AL137000.1-201ENST00000610528 1244 ntBASIC5.4□□□□□ -1.54
CCDC140Q96MF4 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 AC122713.2-201ENST00000624942 3335 ntBASIC5.4□□□□□ -1.55
CCDC140Q96MF4 MIER3-205ENST00000409421 2152 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 AL359263.1-201ENST00000441188 2796 ntBASIC5.4□□□□□ -1.55
CCDC140Q96MF4 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 CASC19-280ENST00000642102 1351 ntBASIC5.4□□□□□ -1.55
CCDC140Q96MF4 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 GPN1-203ENST00000424214 1725 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 AC005034.3-201ENST00000604845 1747 ntBASIC5.4□□□□□ -1.55
CCDC140Q96MF4 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC5.4□□□□□ -1.55
CCDC140Q96MF4 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 UTP6-201ENST00000261708 4392 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 DAZ1-203ENST00000426000 1846 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 HSP90AA2P-201ENST00000530115 2196 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 NCOR1-205ENST00000395857 9501 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 ANKS4B-201ENST00000311620 4352 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 CS-201ENST00000351328 2975 ntAPPRIS P2 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 IL5RA-207ENST00000438560 2252 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL049780.3-201ENST00000624612 1583 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 HERC4-211ENST00000492996 3385 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 GPRIN3-202ENST00000609438 14244 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RN7SKP47-201ENST00000365347 328 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 TRGV3-201ENST00000390346 537 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RPA3-203ENST00000401447 414 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL359715.1-201ENST00000404330 555 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AP006216.1-201ENST00000439104 419 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL592114.2-201ENST00000440142 532 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC239800.1-201ENST00000442049 719 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RPS26P56-201ENST00000444468 240 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RPS20P32-201ENST00000456044 356 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 LINC00430-201ENST00000457672 597 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RN7SL149P-201ENST00000465197 281 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 RN7SL456P-201ENST00000469290 295 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 OR52A4P-201ENST00000472867 958 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AP000893.1-201ENST00000474462 794 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 MARK2P8-201ENST00000476069 952 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC104563.1-201ENST00000476147 376 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AL079303.1-201ENST00000486611 463 ntBASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.39□□□□□ -1.55
CCDC140Q96MF4 SMIM20-202ENST00000514384 774 ntTSL 5 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms