Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 MIR3936-201ENST00000584304 110 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 IMMP1LP3-201ENST00000604197 224 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC099494.2-201ENST00000623371 978 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 AC019080.5-201ENST00000624891 757 ntBASIC4.98□□□□□ -1.61
VPS39Q96JC1 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS39Q96JC1 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS39Q96JC1 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 CYP1D1P-201ENST00000416662 1433 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AL731566.1-201ENST00000620490 1937 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS39Q96JC1 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AL391361.1-201ENST00000405580 489 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 TMBIM7P-201ENST00000418074 855 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 DDX39BP1-205ENST00000422507 192 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 IGKV1OR9-1-201ENST00000424370 284 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 OR52B5P-201ENST00000435337 951 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC099677.4-201ENST00000446786 380 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 KNOP1P3-201ENST00000446933 426 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 TCEA1P1-201ENST00000449716 880 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 IGHV5-78-201ENST00000450948 295 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 ALG13-211ENST00000473389 693 ntTSL 2 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC024558.1-201ENST00000505008 528 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC034244.2-201ENST00000514668 858 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 NMNAT1P1-201ENST00000554095 876 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC090515.3-201ENST00000560431 315 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 CYCSP40-201ENST00000575927 294 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC233702.9-201ENST00000581528 203 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC020915.5-201ENST00000596836 964 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC104687.2-201ENST00000604442 342 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 TAS2R6P-201ENST00000605022 826 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC087783.2-201ENST00000605070 562 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AP000864.1-201ENST00000609424 650 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC008115.4-201ENST00000619780 775 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 BMS1P21-201ENST00000634565 365 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 OR52B5P-202ENST00000641118 1110 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 AC119674.1-212ENST00000641155 993 ntBASIC4.97□□□□□ -1.61
VPS39Q96JC1 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS39Q96JC1 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS39Q96JC1 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
VPS39Q96JC1 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
VPS39Q96JC1 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
VPS39Q96JC1 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.96□□□□□ -1.61
VPS39Q96JC1 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC4.96□□□□□ -1.61
VPS39Q96JC1 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS39Q96JC1 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
VPS39Q96JC1 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS39Q96JC1 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS39Q96JC1 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 RNU6-532P-201ENST00000384318 107 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 MIR320B1-201ENST00000390209 79 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC005522.1-201ENST00000395416 346 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AL139039.2-201ENST00000407436 479 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 RPS26P13-201ENST00000419030 330 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 RPL36AP10-201ENST00000421785 322 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC092162.1-201ENST00000432828 434 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 NPM1P33-201ENST00000438918 872 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC245047.2-201ENST00000441060 530 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 UBA52P7-201ENST00000486088 380 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC067904.2-201ENST00000517322 1283 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
VPS39Q96JC1 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC004825.1-201ENST00000555068 586 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC4.96□□□□□ -1.62
VPS39Q96JC1 MIR3176-201ENST00000582210 90 ntBASIC4.96□□□□□ -1.62
VPS39Q96JC1 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 123.7 ms