Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.4□□□□□ -1.54
HMGB4Q8WW32 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGB4Q8WW32 MIR3934-201ENST00000579806 107 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 MIR4480-201ENST00000582492 71 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGB4Q8WW32 BNIP3P38-201ENST00000601117 544 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 RPP40P2-201ENST00000603596 712 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC5.4□□□□□ -1.54
HMGB4Q8WW32 AC099494.2-201ENST00000623371 978 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 AP000770.2-201ENST00000623694 100 ntBASIC5.4□□□□□ -1.54
HMGB4Q8WW32 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 AP000432.2-201ENST00000624164 2048 ntBASIC5.4□□□□□ -1.55
HMGB4Q8WW32 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
HMGB4Q8WW32 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 CASC19-284ENST00000642142 1868 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC136624.1-201ENST00000400791 413 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AL603865.2-201ENST00000401679 213 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 RPS3AP25-201ENST00000411660 793 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 VTA1P1-201ENST00000414044 866 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC022022.1-201ENST00000430304 178 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AL353093.1-201ENST00000441292 436 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC108161.1-201ENST00000461060 402 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 RPL7P40-201ENST00000481703 745 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 RNA5SP373-201ENST00000517271 95 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC034205.1-201ENST00000520621 638 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 YWHABP2-201ENST00000540201 713 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC122688.1-201ENST00000541494 223 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 VN1R87P-201ENST00000596706 487 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AP001160.4-201ENST00000596971 382 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AP000769.2-201ENST00000602344 396 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 FAM25E-202ENST00000608562 189 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC096586.1-201ENST00000610267 561 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AL121890.3-201ENST00000618494 516 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 AC000095.2-202ENST00000637415 154 ntBASIC5.39□□□□□ -1.55
HMGB4Q8WW32 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
HMGB4Q8WW32 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 POSTN-204ENST00000379749 3210 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AL355834.1-201ENST00000556602 3965 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 OR6X1-201ENST00000327930 1058 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AL035419.1-201ENST00000397037 564 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 RPL23AP59-201ENST00000399415 461 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AP000357.1-201ENST00000409926 1165 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AC013404.1-201ENST00000413068 249 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 TCEA1P4-201ENST00000415066 844 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 USP9YP21-201ENST00000420603 432 ntBASIC5.38□□□□□ -1.55
HMGB4Q8WW32 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5.38□□□□□ -1.55
HMGB4Q8WW32 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 188.5 ms