Protein–RNA interactions for Protein: Q8IVU3

HERC6, Probable E3 ubiquitin-protein ligase HERC6, humanhuman

Predictions only

Length 1,022 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERC6Q8IVU3 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 MFSD8-216ENST00000641147 4009 ntBASIC5.71□□□□□ -1.5
HERC6Q8IVU3 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 NXF4-202ENST00000416098 1465 ntBASIC5.71□□□□□ -1.5
HERC6Q8IVU3 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.71□□□□□ -1.5
HERC6Q8IVU3 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 API5-210ENST00000534600 1760 ntTSL 5 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 U3.3-201ENST00000362986 216 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RNU6-252P-201ENST00000363232 107 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RNU6-1176P-201ENST00000390955 107 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 HMGB1P13-201ENST00000406019 642 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 EI24P4-201ENST00000423683 1078 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RPL7P56-201ENST00000429441 717 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC022022.1-201ENST00000430304 178 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 MRPL50P1-201ENST00000431951 384 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 ZDHHC20P1-204ENST00000435787 423 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 MTND2P40-201ENST00000436718 841 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 PRPF38AP2-201ENST00000438179 851 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 SEPT7P3-201ENST00000455017 621 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC058823.1-201ENST00000485315 474 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RN7SKP260-201ENST00000516907 149 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 SOX5P1-201ENST00000524155 1127 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC122688.1-201ENST00000541494 223 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AL121852.1-201ENST00000554665 430 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC019322.1-201ENST00000571869 389 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 SS18L2P2-201ENST00000583960 235 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AP000769.2-201ENST00000602344 396 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC026741.1-201ENST00000605892 482 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC011472.4-201ENST00000615848 491 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC022306.3-201ENST00000619930 550 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC074140.1-201ENST00000621617 208 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC021106.3-201ENST00000623925 531 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 AC073869.7-201ENST00000640874 297 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 CASC19-284ENST00000642142 1868 ntBASIC5.7□□□□□ -1.5
HERC6Q8IVU3 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
HERC6Q8IVU3 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 MAPK10-338ENST00000641647 3362 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 AC007996.1-201ENST00000620414 2821 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RBPJP2-201ENST00000618187 1444 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RNU6-532P-201ENST00000384318 107 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 MIR620-201ENST00000385232 95 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RPS16P5-201ENST00000406501 404 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RPS4XP16-201ENST00000427198 791 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RPS27AP6-201ENST00000427962 448 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 AC138761.5-201ENST00000433967 325 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 CYCSP11-201ENST00000436426 315 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 RHOT1P3-201ENST00000436571 331 ntBASIC5.69□□□□□ -1.5
HERC6Q8IVU3 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.69□□□□□ -1.5
HERC6Q8IVU3 YWHAZP2-201ENST00000440317 728 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms