Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC88AQ3V6T2 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 RUFY2-201ENST00000265865 2033 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 RN7SKP280-201ENST00000364196 304 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 OR2M5-201ENST00000366476 939 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC013429.2-201ENST00000418798 781 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 SLC4A1APP1-201ENST00000419995 602 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AL358176.3-201ENST00000420757 454 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 RN7SL132P-201ENST00000478131 296 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC090286.3-201ENST00000573133 187 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 SNORA74C-1-201ENST00000580726 201 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC008833.1-201ENST00000611633 691 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 CKS1BP6-201ENST00000424932 240 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 FTH1P16-201ENST00000435241 552 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC023632.4-201ENST00000517783 191 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC093249.4-201ENST00000564755 259 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 MIR3158-1-201ENST00000583596 81 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC090181.2-201ENST00000602975 672 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 AC004777.1-201ENST00000624317 287 ntBASIC5.73□□□□□ -1.49
CCDC88AQ3V6T2 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 BCORP1-203ENST00000513194 5093 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 SPRR2C-201ENST00000290702 219 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 RNA5SP366-201ENST00000365454 123 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AC127024.5-201ENST00000580085 462 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AC015914.2-201ENST00000618167 288 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AL049536.1-201ENST00000625043 744 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AC025031.4-201ENST00000621248 3271 ntBASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AL606516.1-201ENST00000455438 1861 ntTSL 2 BASIC5.72□□□□□ -1.49
CCDC88AQ3V6T2 AC083837.1-201ENST00000565297 2994 ntBASIC5.71□□□□□ -1.49
CCDC88AQ3V6T2 MAPK10-328ENST00000641553 4009 ntBASIC5.71□□□□□ -1.49
CCDC88AQ3V6T2 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC88AQ3V6T2 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC88AQ3V6T2 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC88AQ3V6T2 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 LINC00993-201ENST00000420453 540 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC090602.1-201ENST00000469695 252 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC105031.1-201ENST00000518550 476 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC109635.6-201ENST00000525487 1113 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 UGT2B26P-201ENST00000508672 1613 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC135352.1-201ENST00000506173 1418 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 RNA5SP283-201ENST00000365604 119 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 EIF4A1P3-201ENST00000411521 244 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC009237.10-201ENST00000414112 510 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 E2F6P2-201ENST00000420708 748 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC104333.2-201ENST00000422630 192 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC108463.1-201ENST00000450258 347 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC108210.1-201ENST00000510772 825 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 SOX9-AS1-211ENST00000533179 460 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC023043.4-201ENST00000612081 449 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AL356863.1-201ENST00000623378 1080 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 AC006453.5-201ENST00000636451 619 ntBASIC5.71□□□□□ -1.5
CCDC88AQ3V6T2 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
CCDC88AQ3V6T2 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms