Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 OSBPL9P3-201ENST00000534523 595 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.42□□□□□ -1.54
USP41Q3LFD5 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.42□□□□□ -1.54
USP41Q3LFD5 AC063949.1-201ENST00000552900 865 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 AC093510.2-201ENST00000562820 896 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.42□□□□□ -1.54
USP41Q3LFD5 MIR4330-201ENST00000579077 105 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 MIR4737-201ENST00000583979 81 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC5.42□□□□□ -1.54
USP41Q3LFD5 AC242628.1-201ENST00000606810 391 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 AP005432.2-201ENST00000608162 586 ntBASIC5.42□□□□□ -1.54
USP41Q3LFD5 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
USP41Q3LFD5 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.42□□□□□ -1.54
USP41Q3LFD5 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.42□□□□□ -1.54
USP41Q3LFD5 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 RNU6-650P-201ENST00000365658 111 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AL021331.1-201ENST00000402817 582 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 PTP4A1P3-201ENST00000433661 420 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 RPS4XP12-201ENST00000461747 709 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC091544.1-201ENST00000484702 348 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC010350.1-201ENST00000504908 231 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC016550.1-201ENST00000505348 785 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC098976.1-201ENST00000513014 541 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 HMGN1P15-201ENST00000513870 295 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC122134.1-202ENST00000569111 1201 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 AP001521.2-201ENST00000608772 546 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 BNIP3P41-202ENST00000616656 861 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
USP41Q3LFD5 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
USP41Q3LFD5 SDAD1P1-202ENST00000524156 2051 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC083899.2-201ENST00000423285 1376 ntBASIC5.41□□□□□ -1.54
USP41Q3LFD5 AC104260.2-201ENST00000623551 3497 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
USP41Q3LFD5 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP41Q3LFD5 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP41Q3LFD5 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
USP41Q3LFD5 RNVU1-6-201ENST00000364688 164 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 RNA5SP223-201ENST00000365174 120 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 NPM1P40-201ENST00000412758 733 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 RPL7AP49-201ENST00000429522 581 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL591438.1-201ENST00000433508 581 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL158053.1-201ENST00000441503 453 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 OR52J1P-201ENST00000450596 932 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 GYG1P1-201ENST00000460864 698 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 LARP7P4-201ENST00000481075 878 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 GAPDHP56-201ENST00000506031 988 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 SNORA76.2-201ENST00000517095 137 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 GCSHP4-201ENST00000538792 439 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 AC233266.2-201ENST00000567067 528 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 MIR4270-201ENST00000581799 70 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AC015911.5-201ENST00000587076 451 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 BNIP3P35-201ENST00000604530 490 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AP004372.1-201ENST00000604842 844 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AC004775.1-201ENST00000607389 753 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 Z95327.3-201ENST00000610385 572 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AL645927.2-201ENST00000618350 349 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 AC010435.1-201ENST00000623353 1177 ntBASIC5.4□□□□□ -1.54
USP41Q3LFD5 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.4□□□□□ -1.54
USP41Q3LFD5 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.4□□□□□ -1.55
USP41Q3LFD5 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 112 ms