Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC079395.2-201ENST00000610982 737 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 AC093783.1-201ENST00000612976 329 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 RNA5SP439-201ENST00000617595 124 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 AC091304.6-201ENST00000619761 202 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 GPR34-203ENST00000620846 1282 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 AC109454.4-201ENST00000623411 649 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 AC013470.2-206ENST00000636804 771 ntAPPRIS P5 TSL 5 BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 OR6C3-203ENST00000641740 1093 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 BX649567.1-201ENST00000642071 1134 ntBASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
PTCHD3Q3KNS1 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 RN7SKP160-201ENST00000363804 340 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 RNA5SP132-201ENST00000364725 118 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AL354766.1-201ENST00000423396 542 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 GTF2IP2-201ENST00000424290 697 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC113412.1-201ENST00000425840 504 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 DPY19L1P2-201ENST00000426647 915 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 BX276092.6-201ENST00000430476 250 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC012075.1-201ENST00000436549 580 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 MTND2P22-201ENST00000444325 1033 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 OR6K5P-201ENST00000447050 945 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 BX276092.8-201ENST00000455722 250 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 RN7SL629P-201ENST00000489622 285 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 DUBR-205ENST00000495228 411 ntTSL 2 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 UBA6-AS1-204ENST00000502758 547 ntTSL 4 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC027026.1-201ENST00000532323 742 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC090022.1-201ENST00000546569 311 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 MIR1273E-201ENST00000581165 102 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 MIR3176-201ENST00000582210 90 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC007448.1-201ENST00000582714 234 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC013470.4-201ENST00000619978 986 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC015660.5-201ENST00000623238 564 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC007342.8-201ENST00000623278 678 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 LINC02019-201ENST00000608605 2060 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 LINC02070-201ENST00000460586 1321 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 AC007938.2-201ENST00000604666 2634 ntBASIC5.42□□□□□ -1.54
PTCHD3Q3KNS1 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 RNU1-87P-201ENST00000363727 170 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 RN7SKP124-201ENST00000364730 341 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 RNU6-532P-201ENST00000384318 107 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 Y_RNA.472-201ENST00000384322 102 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AC104297.1-201ENST00000393779 870 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AC013404.1-201ENST00000413068 249 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 BTF3P8-201ENST00000414577 526 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AL356320.2-201ENST00000417263 507 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 RIMKLBP2-201ENST00000424737 654 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AL390119.1-201ENST00000440329 312 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 NPM1P19-201ENST00000450070 712 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 CDC42P1-201ENST00000456658 548 ntBASIC5.41□□□□□ -1.54
PTCHD3Q3KNS1 AL122001.1-201ENST00000457027 370 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 79.6 ms