Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC005840.5-201ENST00000619166 599 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 AC016542.2-201ENST00000624201 619 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 CR381572.2-201ENST00000624852 397 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 AC068254.2-201ENST00000623938 3577 ntBASIC3.5□□□□□ -1.85
FOXA3P55318 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.5□□□□□ -1.85
FOXA3P55318 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC3.5□□□□□ -1.85
FOXA3P55318 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
FOXA3P55318 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC3.5□□□□□ -1.85
FOXA3P55318 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 AC011493.1-201ENST00000596753 1632 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 SNORA17.1-201ENST00000362945 126 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 RHOT1P2-201ENST00000366423 333 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
FOXA3P55318 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA3P55318 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 ATP5A1P8-201ENST00000423669 1291 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 RPL7P33-201ENST00000444159 742 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 YWHAEP1-201ENST00000453697 763 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA3P55318 RN7SL222P-201ENST00000476452 299 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC3.49□□□□□ -1.85
FOXA3P55318 RNA5SP497-201ENST00000516081 97 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 RN7SKP34-201ENST00000516142 244 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA3P55318 AC090819.1-201ENST00000523800 1111 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 OR10G5P-201ENST00000532733 358 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 LINC02394-201ENST00000549140 543 ntTSL 4 BASIC3.49□□□□□ -1.85
FOXA3P55318 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA3P55318 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
FOXA3P55318 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC3.49□□□□□ -1.85
FOXA3P55318 AC010547.7-201ENST00000570323 333 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AC139099.1-201ENST00000573737 976 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC3.49□□□□□ -1.85
FOXA3P55318 AC091178.1-203ENST00000584586 279 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC3.49□□□□□ -1.85
FOXA3P55318 IMMP1LP3-201ENST00000604197 224 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC3.49□□□□□ -1.85
FOXA3P55318 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC3.49□□□□□ -1.85
FOXA3P55318 MIR6889-201ENST00000613185 59 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AL096712.1-201ENST00000614561 159 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
FOXA3P55318 AL691477.1-201ENST00000624398 162 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 AC136428.4-201ENST00000634254 1155 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 CYP4Z2P-201ENST00000423332 1512 ntBASIC3.49□□□□□ -1.85
FOXA3P55318 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
FOXA3P55318 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC007390.2-201ENST00000606229 3803 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AC012020.1-201ENST00000624541 1728 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 RNA5SP132-201ENST00000364725 118 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 Z97832.1-201ENST00000402490 328 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 RN7SKP167-201ENST00000411047 285 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA3P55318 RPL12P43-201ENST00000420608 499 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 GLUD1P9-201ENST00000420997 1173 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 NAP1L4P3-201ENST00000432820 1147 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC3.48□□□□□ -1.85
FOXA3P55318 AL353748.1-201ENST00000440753 474 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 RPL34P20-201ENST00000442771 351 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC133473.1-201ENST00000455173 299 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 CCDC75P1-201ENST00000469247 791 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 RN7SL170P-201ENST00000487098 295 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AC025164.1-201ENST00000496249 478 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
FOXA3P55318 COX6B1P5-201ENST00000509843 249 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 VWA8P1-201ENST00000510889 176 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 AC079209.2-201ENST00000519107 431 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC3.48□□□□□ -1.85
FOXA3P55318 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC3.48□□□□□ -1.85
FOXA3P55318 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC3.48□□□□□ -1.85
FOXA3P55318 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 OR7E128P-201ENST00000532736 1024 ntBASIC3.48□□□□□ -1.85
FOXA3P55318 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC3.48□□□□□ -1.85
FOXA3P55318 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC3.48□□□□□ -1.85
FOXA3P55318 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 128.4 ms