Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 AP004372.1-201ENST00000604842 844 ntBASIC5.66□□□□□ -1.5
COPB1P53618 SDR42E1P1-201ENST00000611327 477 ntBASIC5.66□□□□□ -1.5
COPB1P53618 RNA5SP440-201ENST00000612665 119 ntBASIC5.66□□□□□ -1.5
COPB1P53618 AC009464.1-201ENST00000615731 469 ntBASIC5.66□□□□□ -1.5
COPB1P53618 AC037198.3-201ENST00000616754 526 ntBASIC5.66□□□□□ -1.5
COPB1P53618 AL669942.2-201ENST00000620352 697 ntBASIC5.66□□□□□ -1.5
COPB1P53618 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC5.66□□□□□ -1.5
COPB1P53618 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.66□□□□□ -1.5
COPB1P53618 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.66□□□□□ -1.5
COPB1P53618 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COPB1P53618 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.66□□□□□ -1.5
COPB1P53618 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.66□□□□□ -1.5
COPB1P53618 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
COPB1P53618 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC5.66□□□□□ -1.5
COPB1P53618 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COPB1P53618 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.66□□□□□ -1.5
COPB1P53618 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.66□□□□□ -1.5
COPB1P53618 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
COPB1P53618 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.65□□□□□ -1.5
COPB1P53618 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.65□□□□□ -1.5
COPB1P53618 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 AL672167.1-204ENST00000641875 3017 ntBASIC5.65□□□□□ -1.5
COPB1P53618 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 ZNF29P-201ENST00000225587 168 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RAD1P1-201ENST00000231383 813 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RNU6-1251P-201ENST00000364502 107 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RN7SKP124-201ENST00000364730 341 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RNU1-77P-201ENST00000390868 162 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RNA5SP339-201ENST00000390987 122 ntBASIC5.65□□□□□ -1.5
COPB1P53618 TAF9BP2-201ENST00000400856 499 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AL355615.1-201ENST00000406187 641 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
COPB1P53618 PTP4A1P7-201ENST00000423476 514 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AL139148.1-201ENST00000427122 680 ntBASIC5.65□□□□□ -1.5
COPB1P53618 BX119904.1-201ENST00000432026 348 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RPL12P18-201ENST00000437175 325 ntBASIC5.65□□□□□ -1.5
COPB1P53618 RPL35AP21-201ENST00000437667 333 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 GTF3AP5-201ENST00000442645 697 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.65□□□□□ -1.5
COPB1P53618 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 MRPL35P2-201ENST00000448009 511 ntBASIC5.65□□□□□ -1.5
COPB1P53618 EXOSC3P1-201ENST00000448649 500 ntBASIC5.65□□□□□ -1.5
COPB1P53618 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.65□□□□□ -1.5
COPB1P53618 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 RPL7P55-201ENST00000450522 746 ntBASIC5.65□□□□□ -1.5
COPB1P53618 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.65□□□□□ -1.5
COPB1P53618 RPL21P18-201ENST00000469899 480 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC020779.1-201ENST00000478757 796 ntBASIC5.65□□□□□ -1.5
COPB1P53618 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC5.65□□□□□ -1.5
COPB1P53618 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.65□□□□□ -1.5
COPB1P53618 AC021087.2-201ENST00000504656 1203 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC020699.1-201ENST00000505161 445 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC020937.1-201ENST00000519677 1013 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AP001636.2-201ENST00000525517 696 ntBASIC5.65□□□□□ -1.5
COPB1P53618 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.65□□□□□ -1.5
COPB1P53618 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 AC007688.2-201ENST00000545158 369 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC5.65□□□□□ -1.5
COPB1P53618 AC093424.1-201ENST00000604999 338 ntBASIC5.65□□□□□ -1.5
COPB1P53618 Z99289.3-201ENST00000605586 594 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AP005432.2-201ENST00000608162 586 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC005021.1-201ENST00000608730 355 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AL512624.1-201ENST00000613638 469 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AL133370.2-201ENST00000619934 439 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.65□□□□□ -1.5
COPB1P53618 MIR8080-201ENST00000622224 89 ntBASIC5.65□□□□□ -1.5
COPB1P53618 AC019226.2-201ENST00000625973 424 ntBASIC5.65□□□□□ -1.5
COPB1P53618 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC5.65□□□□□ -1.5
COPB1P53618 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.65□□□□□ -1.5
COPB1P53618 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.51
COPB1P53618 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC5.65□□□□□ -1.51
COPB1P53618 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.65□□□□□ -1.51
COPB1P53618 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC5.65□□□□□ -1.51
COPB1P53618 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
COPB1P53618 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.51
COPB1P53618 ICE2P1-201ENST00000512800 1849 ntBASIC5.64□□□□□ -1.51
COPB1P53618 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.64□□□□□ -1.51
COPB1P53618 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
COPB1P53618 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COPB1P53618 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COPB1P53618 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COPB1P53618 RNU6-468P-201ENST00000384003 109 ntBASIC5.64□□□□□ -1.51
COPB1P53618 RNU1-149P-201ENST00000390870 161 ntBASIC5.64□□□□□ -1.51
COPB1P53618 RNU6-298P-201ENST00000390888 96 ntBASIC5.64□□□□□ -1.51
COPB1P53618 AL391422.1-201ENST00000402155 436 ntBASIC5.64□□□□□ -1.51
COPB1P53618 RPL10P10-201ENST00000403509 664 ntBASIC5.64□□□□□ -1.51
COPB1P53618 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.64□□□□□ -1.51
COPB1P53618 OR5M12P-201ENST00000423388 929 ntBASIC5.64□□□□□ -1.51
COPB1P53618 EI24P4-201ENST00000423683 1078 ntBASIC5.64□□□□□ -1.51
COPB1P53618 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC5.64□□□□□ -1.51
COPB1P53618 AC092634.2-201ENST00000428146 1010 ntBASIC5.64□□□□□ -1.51
COPB1P53618 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.64□□□□□ -1.51
COPB1P53618 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC5.64□□□□□ -1.51
COPB1P53618 RPS29P10-201ENST00000439197 166 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.4 ms