Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC006326.1-201ENST00000445465 787 ntBASIC5.91□□□□□ -1.46
COL18A1P39060 RPS7P7-201ENST00000463499 571 ntBASIC5.91□□□□□ -1.46
COL18A1P39060 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.91□□□□□ -1.46
COL18A1P39060 AC023762.1-201ENST00000603280 584 ntBASIC5.91□□□□□ -1.46
COL18A1P39060 MIR8059-201ENST00000620427 81 ntBASIC5.91□□□□□ -1.46
COL18A1P39060 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC5.91□□□□□ -1.46
COL18A1P39060 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.91□□□□□ -1.46
COL18A1P39060 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.91□□□□□ -1.46
COL18A1P39060 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.91□□□□□ -1.46
COL18A1P39060 DTNA-203ENST00000315456 1706 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
COL18A1P39060 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL18A1P39060 TRAV35-201ENST00000390462 330 ntBASIC5.9□□□□□ -1.46
COL18A1P39060 RPS3AP25-201ENST00000411660 793 ntBASIC5.9□□□□□ -1.46
COL18A1P39060 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.9□□□□□ -1.46
COL18A1P39060 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.9□□□□□ -1.46
COL18A1P39060 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.9□□□□□ -1.46
COL18A1P39060 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.9□□□□□ -1.46
COL18A1P39060 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.9□□□□□ -1.46
COL18A1P39060 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.9□□□□□ -1.46
COL18A1P39060 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL18A1P39060 AC005261.2-201ENST00000593427 4258 ntBASIC5.9□□□□□ -1.46
COL18A1P39060 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
COL18A1P39060 APOL6-201ENST00000409652 10121 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
COL18A1P39060 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
COL18A1P39060 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
COL18A1P39060 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
COL18A1P39060 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.47
COL18A1P39060 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.9□□□□□ -1.47
COL18A1P39060 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
COL18A1P39060 RNA5SP151-201ENST00000365632 117 ntBASIC5.9□□□□□ -1.47
COL18A1P39060 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC5.9□□□□□ -1.47
COL18A1P39060 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC5.9□□□□□ -1.47
COL18A1P39060 MFSD13B-201ENST00000420133 1290 ntBASIC5.9□□□□□ -1.47
COL18A1P39060 RPL23AP38-201ENST00000423801 469 ntBASIC5.9□□□□□ -1.47
COL18A1P39060 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.9□□□□□ -1.47
COL18A1P39060 AL603839.1-201ENST00000453437 432 ntTSL 2 BASIC5.9□□□□□ -1.47
COL18A1P39060 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.9□□□□□ -1.47
COL18A1P39060 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.9□□□□□ -1.47
COL18A1P39060 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.9□□□□□ -1.47
COL18A1P39060 AC130352.1-201ENST00000602979 661 ntBASIC5.9□□□□□ -1.47
COL18A1P39060 AL445363.3-201ENST00000623080 671 ntBASIC5.9□□□□□ -1.47
COL18A1P39060 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC5.9□□□□□ -1.47
COL18A1P39060 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
COL18A1P39060 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.89□□□□□ -1.47
COL18A1P39060 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.89□□□□□ -1.47
COL18A1P39060 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 CCL7-202ENST00000394627 696 ntTSL 3 BASIC5.89□□□□□ -1.47
COL18A1P39060 RN7SKP235-201ENST00000410662 305 ntBASIC5.89□□□□□ -1.47
COL18A1P39060 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
COL18A1P39060 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 RNA5SP49-201ENST00000516450 115 ntBASIC5.89□□□□□ -1.47
COL18A1P39060 SNORA67.7-201ENST00000516664 135 ntBASIC5.89□□□□□ -1.47
COL18A1P39060 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.89□□□□□ -1.47
COL18A1P39060 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.89□□□□□ -1.47
COL18A1P39060 CDRT1-208ENST00000630868 794 ntBASIC5.89□□□□□ -1.47
COL18A1P39060 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC5.89□□□□□ -1.47
COL18A1P39060 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
COL18A1P39060 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 MFSD8-242ENST00000641690 4199 ntBASIC5.88□□□□□ -1.47
COL18A1P39060 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL18A1P39060 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC5.88□□□□□ -1.47
COL18A1P39060 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.88□□□□□ -1.47
COL18A1P39060 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL18A1P39060 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL18A1P39060 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL18A1P39060 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
COL18A1P39060 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.88□□□□□ -1.47
COL18A1P39060 AL132838.2-201ENST00000492041 314 ntBASIC5.88□□□□□ -1.47
COL18A1P39060 NPM1P41-201ENST00000512920 831 ntBASIC5.88□□□□□ -1.47
COL18A1P39060 AC109635.6-201ENST00000525487 1113 ntBASIC5.88□□□□□ -1.47
COL18A1P39060 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC5.88□□□□□ -1.47
COL18A1P39060 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 AC012442.3-202ENST00000636742 206 ntBASIC5.88□□□□□ -1.47
COL18A1P39060 LINC01808-202ENST00000641680 1116 ntBASIC5.88□□□□□ -1.47
COL18A1P39060 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.88□□□□□ -1.47
COL18A1P39060 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
COL18A1P39060 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
COL18A1P39060 AP005435.3-201ENST00000531260 3198 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 111.4 ms