Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 MIR6891-201ENST00000618788 93 ntBASIC5.6□□□□□ -1.51
BRCA1P38398 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.59□□□□□ -1.51
BRCA1P38398 NLN-202ENST00000502464 8354 ntTSL 5 BASIC5.59□□□□□ -1.51
BRCA1P38398 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC5.59□□□□□ -1.51
BRCA1P38398 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 CFHR3-206ENST00000617219 1462 ntTSL 5 BASIC5.59□□□□□ -1.51
BRCA1P38398 SNORA62.3-201ENST00000365110 153 ntBASIC5.59□□□□□ -1.51
BRCA1P38398 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 RN7SKP17-201ENST00000411242 351 ntBASIC5.59□□□□□ -1.51
BRCA1P38398 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC5.59□□□□□ -1.51
BRCA1P38398 AL356276.2-201ENST00000435919 558 ntBASIC5.59□□□□□ -1.51
BRCA1P38398 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
BRCA1P38398 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.59□□□□□ -1.51
BRCA1P38398 AL391427.1-201ENST00000451575 425 ntTSL 3 BASIC5.59□□□□□ -1.51
BRCA1P38398 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.59□□□□□ -1.51
BRCA1P38398 AP001804.2-201ENST00000533932 910 ntBASIC5.59□□□□□ -1.51
BRCA1P38398 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC5.59□□□□□ -1.51
BRCA1P38398 PWRN1-202ENST00000562501 642 ntTSL 3 BASIC5.59□□□□□ -1.51
BRCA1P38398 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.59□□□□□ -1.51
BRCA1P38398 AC020634.1-201ENST00000608701 549 ntBASIC5.59□□□□□ -1.51
BRCA1P38398 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
BRCA1P38398 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
BRCA1P38398 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
BRCA1P38398 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
BRCA1P38398 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
BRCA1P38398 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
BRCA1P38398 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
BRCA1P38398 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC5.59□□□□□ -1.52
BRCA1P38398 ZNF402P-201ENST00000404435 3100 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 PHLPP2-201ENST00000393524 8467 ntTSL 2 BASIC5.58□□□□□ -1.52
BRCA1P38398 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.58□□□□□ -1.52
BRCA1P38398 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 5S_rRNA.1-201ENST00000364415 116 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 RPL23AP43-201ENST00000446445 471 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC5.58□□□□□ -1.52
BRCA1P38398 Y_RNA.719-201ENST00000517156 106 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.58□□□□□ -1.52
BRCA1P38398 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.58□□□□□ -1.52
BRCA1P38398 IPO5P1-202ENST00000600039 287 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
BRCA1P38398 CPHL1P-201ENST00000461341 3407 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 RNU6ATAC-201ENST00000408749 126 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC5.58□□□□□ -1.52
BRCA1P38398 AL445584.1-201ENST00000431451 330 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 RPL37P1-201ENST00000432310 284 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 RPS29P7-201ENST00000439662 171 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC5.58□□□□□ -1.52
BRCA1P38398 RPL7P33-201ENST00000444159 742 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 AC091564.1-201ENST00000464563 479 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 RN7SL197P-201ENST00000466981 299 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.58□□□□□ -1.52
BRCA1P38398 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.58□□□□□ -1.52
BRCA1P38398 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.58□□□□□ -1.52
BRCA1P38398 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.58□□□□□ -1.52
BRCA1P38398 OR2L1P-202ENST00000641567 1023 ntBASIC5.58□□□□□ -1.52
BRCA1P38398 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
BRCA1P38398 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC5.58□□□□□ -1.52
BRCA1P38398 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.57□□□□□ -1.52
BRCA1P38398 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
BRCA1P38398 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC5.57□□□□□ -1.52
BRCA1P38398 SPAG9-209ENST00000510283 4949 ntTSL 2 BASIC5.57□□□□□ -1.52
BRCA1P38398 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 LINC00622-201ENST00000562811 1570 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
BRCA1P38398 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 RNU6-525P-201ENST00000363685 104 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 ADAM24P-201ENST00000398655 2101 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.57□□□□□ -1.52
BRCA1P38398 AL139039.2-201ENST00000407436 479 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 RPL12P9-201ENST00000412942 488 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 RGS17P1-201ENST00000423358 553 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 HMGB3P5-201ENST00000428894 612 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.57□□□□□ -1.52
BRCA1P38398 AL132838.2-201ENST00000492041 314 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC5.57□□□□□ -1.52
BRCA1P38398 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC5.57□□□□□ -1.52
BRCA1P38398 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.57□□□□□ -1.52
BRCA1P38398 AC026367.3-201ENST00000619032 590 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC5.57□□□□□ -1.52
BRCA1P38398 MIR3653-201ENST00000625572 110 ntBASIC5.57□□□□□ -1.52
BRCA1P38398 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
BRCA1P38398 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms