Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LCMT1-AS1-204ENST00000569920 474 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC016382.1-201ENST00000583580 387 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC024060.1-201ENST00000607052 494 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AC005021.1-201ENST00000608730 355 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL122125.1-201ENST00000616999 600 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 U1.31-201ENST00000620022 160 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 KBTBD2-208ENST00000621876 1196 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 AC145207.9-201ENST00000623802 325 ntBASIC6.37□□□□□ -1.39
COL6A1P12109 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
COL6A1P12109 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.37□□□□□ -1.39
COL6A1P12109 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC6.37□□□□□ -1.39
COL6A1P12109 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 MT-RNR2-201ENST00000387347 1559 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC6.36□□□□□ -1.39
COL6A1P12109 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 SGO1P1-201ENST00000603525 1447 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 RNU4-92P-201ENST00000363783 136 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 RNU4-2-201ENST00000365668 141 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 SNORD116-12-201ENST00000384468 92 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
COL6A1P12109 RPL7P27-201ENST00000403775 720 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AL136310.1-201ENST00000404926 654 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 AL034345.2-202ENST00000416948 830 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC006333.1-201ENST00000422401 410 ntTSL 3 BASIC6.36□□□□□ -1.39
COL6A1P12109 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 AL353706.1-201ENST00000436728 494 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AL663074.2-201ENST00000440621 479 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC009220.1-201ENST00000451614 275 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 Z95152.1-201ENST00000453556 656 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 RPL7P6-201ENST00000480903 738 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC007686.1-201ENST00000488511 463 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC6.36□□□□□ -1.39
COL6A1P12109 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 OR4A40P-201ENST00000533878 948 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 AP004372.1-201ENST00000604842 844 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AL683813.2-201ENST00000605245 502 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AC245297.2-201ENST00000610119 565 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 C17orf112-201ENST00000623702 835 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC073530.2-201ENST00000623987 261 ntBASIC6.36□□□□□ -1.39
COL6A1P12109 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC6.36□□□□□ -1.39
COL6A1P12109 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 CACNB4-229ENST00000636617 5757 ntTSL 5 BASIC6.36□□□□□ -1.39
COL6A1P12109 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC6.36□□□□□ -1.39
COL6A1P12109 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL6A1P12109 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL6A1P12109 ZNF733P-202ENST00000444809 1573 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.35□□□□□ -1.39
COL6A1P12109 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 CR1-201ENST00000367049 7470 ntAPPRIS P1 TSL 5 BASIC6.35□□□□□ -1.39
COL6A1P12109 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL6A1P12109 AC009779.8-201ENST00000641684 4384 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 TRPC5OS-201ENST00000371970 2806 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC6.35□□□□□ -1.39
COL6A1P12109 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL6A1P12109 RNU5B-1-201ENST00000363286 116 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC6.35□□□□□ -1.39
COL6A1P12109 MIR141-201ENST00000384975 95 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.35□□□□□ -1.39
COL6A1P12109 AL158825.1-201ENST00000414735 521 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 AL590806.1-201ENST00000415818 853 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.35□□□□□ -1.39
COL6A1P12109 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC6.35□□□□□ -1.39
COL6A1P12109 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC6.35□□□□□ -1.39
COL6A1P12109 AC010153.1-201ENST00000432862 727 ntBASIC6.35□□□□□ -1.39
COL6A1P12109 CACYBPP1-201ENST00000438592 684 ntBASIC6.35□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms