Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 RN7SL98P-201ENST00000462271 300 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 UQCRHP4-201ENST00000471686 272 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC041039.1-201ENST00000485656 536 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AP000827.1-201ENST00000527814 258 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC027216.1-201ENST00000577726 685 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 PRPF19P1-201ENST00000584766 898 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC073137.1-201ENST00000605636 634 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC026367.3-201ENST00000619032 590 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AC009120.7-201ENST00000623452 780 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 AP002512.4-202ENST00000641599 4530 ntBASIC7.07□□□□□ -1.28
SCAPERQ9BY12 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
SCAPERQ9BY12 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AL449283.1-201ENST00000602631 3403 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AL590762.2-201ENST00000395798 571 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 PEX12P1-201ENST00000400284 1048 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 OR1F12-201ENST00000402365 945 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 TMBIM7P-201ENST00000418074 855 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AC105137.1-201ENST00000484355 562 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 PYM1-205ENST00000547925 499 ntTSL 3 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 MIR4660-201ENST00000583549 74 ntBASIC7.06□□□□□ -1.28
SCAPERQ9BY12 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 CARF-208ENST00000428585 2513 ntTSL 2 BASIC7.06□□□□□ -1.28
SCAPERQ9BY12 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 AC017104.4-201ENST00000636283 1592 ntBASIC7.05□□□□□ -1.28
SCAPERQ9BY12 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 GRIK2-203ENST00000369134 4185 ntTSL 5 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 WAC-209ENST00000428935 1320 ntTSL 2 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 RNA5SP366-201ENST00000365454 123 ntBASIC7.05□□□□□ -1.28
SCAPERQ9BY12 AL022722.2-201ENST00000402519 180 ntBASIC7.05□□□□□ -1.28
SCAPERQ9BY12 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 AP002812.1-201ENST00000495378 474 ntBASIC7.05□□□□□ -1.28
SCAPERQ9BY12 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 SNORA67.7-201ENST00000516664 135 ntBASIC7.05□□□□□ -1.28
SCAPERQ9BY12 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 AC006133.1-201ENST00000617106 264 ntBASIC7.05□□□□□ -1.28
SCAPERQ9BY12 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC7.05□□□□□ -1.28
SCAPERQ9BY12 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 PPIAP31-201ENST00000405422 495 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 TEX41-203ENST00000420472 765 ntTSL 3 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AL451139.1-201ENST00000434718 346 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 RPL23AP93-201ENST00000440847 484 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 SCARNA10-201ENST00000459255 330 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AC053481.3-201ENST00000577881 843 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 RN7SL176P-201ENST00000580352 264 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 IPO5P1-202ENST00000600039 287 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 MIR3653-201ENST00000625572 110 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 CYP1D1P-201ENST00000416662 1433 ntBASIC7.04□□□□□ -1.28
SCAPERQ9BY12 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
SCAPERQ9BY12 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC7.03□□□□□ -1.28
SCAPERQ9BY12 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCAPERQ9BY12 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
SCAPERQ9BY12 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC7.03□□□□□ -1.28
SCAPERQ9BY12 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
SCAPERQ9BY12 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms