Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AL731892.1-201ENST00000437364 1192 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CBX1P4-201ENST00000439415 457 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC016691.1-201ENST00000441321 413 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CEACAMP5-201ENST00000448037 961 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 PMS2P11-201ENST00000451831 574 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL034369.1-201ENST00000453808 477 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC103851.1-201ENST00000506833 274 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC109481.1-201ENST00000509173 282 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 SNORA40.12-201ENST00000516329 111 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC022360.2-202ENST00000517308 407 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 MIR4312-201ENST00000579909 76 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 MIR4470-201ENST00000583453 72 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC090948.1-201ENST00000607464 549 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL355802.3-201ENST00000607571 545 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC093913.1-201ENST00000614178 329 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AC134503.1-201ENST00000633048 54 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AL023806.3-201ENST00000638502 2704 ntBASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 BMS1-201ENST00000374518 7753 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CLHC1-204ENST00000407122 2139 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 UBR1-202ENST00000546274 3332 ntTSL 2 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 MAPK10-392ENST00000642103 3126 ntAPPRIS P2 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CCP110-202ENST00000396208 5151 ntAPPRIS P3 TSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC7.58□□□□□ -1.2
LIMD1Q9UGP4 PLEKHS1-202ENST00000361048 3249 ntAPPRIS P3 TSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 PLEKHS1-207ENST00000619563 3247 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 UTY-213ENST00000612274 6586 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 NUFIP1-201ENST00000379161 3492 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 TOPORS-202ENST00000379858 3621 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RPL37A-210ENST00000491306 3647 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 ZNF385B-201ENST00000336917 2610 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 MRE11P1-201ENST00000464884 2127 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 GLYATL1P1-201ENST00000528297 1607 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AL591379.1-201ENST00000315293 3739 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 MMP10-201ENST00000279441 1758 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC069222.1-201ENST00000608028 3360 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AL031594.1-201ENST00000417123 1932 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 NRG3-206ENST00000545131 2713 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 CASC19-204ENST00000641001 2055 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 Y_RNA.46-201ENST00000362695 102 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RNU6-74P-201ENST00000384235 107 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RPL7P58-201ENST00000402913 758 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 GAPDHP42-201ENST00000406848 981 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 SNORA3.1-201ENST00000408166 111 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC007091.1-201ENST00000412563 566 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RPL36AP53-201ENST00000432891 316 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 LRRC23-208ENST00000436789 796 ntTSL 3 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC005040.1-201ENST00000437783 482 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC006335.2-201ENST00000437993 330 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 BRK1P2-201ENST00000442875 223 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC004980.3-201ENST00000447046 365 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 SBDSP1-204ENST00000453858 737 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RPL37P3-201ENST00000456825 293 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC130509.1-201ENST00000464158 433 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AP003385.3-201ENST00000472498 287 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC104825.1-201ENST00000503186 685 ntTSL 3 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 MINOS1P4-201ENST00000515470 318 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC022861.1-201ENST00000522981 663 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 SDHCP4-201ENST00000532834 510 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 TRIM69-208ENST00000560442 1262 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 NDUFA3P4-201ENST00000560814 250 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC090312.1-201ENST00000580637 348 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 RPSAP66-201ENST00000592196 606 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC011497.2-201ENST00000600255 639 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AC116312.1-201ENST00000606841 314 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AL359091.2-201ENST00000609303 556 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 AL136097.3-201ENST00000611097 505 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC7.57□□□□□ -1.2
LIMD1Q9UGP4 GLYATL1-219ENST00000612196 909 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms